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系统性硬化症相关肺动脉高压关键基因的鉴定与验证

Identification and Validation of Key Genes Associated With Systemic Sclerosis-Related Pulmonary Hypertension.

作者信息

Zheng Ji-Na, Li Yang, Yan Yue-Mei, Shi Hui, Zou Tian-Tian, Shao Wen-Qi, Wang Qiang

机构信息

Department of Dermatology, Zhongshan Hospital, Fudan University, Shanghai, China.

Department of Stomatology, Zhongshan Hospital, Fudan University, Shanghai, China.

出版信息

Front Genet. 2020 Jul 24;11:816. doi: 10.3389/fgene.2020.00816. eCollection 2020.

Abstract

Systemic sclerosis-associated with pulmonary arterial hypertension (SSc-PAH) is still a major cause of SSc related deaths. Early diagnosis and prompt treatment are crucial to reduce the mortality of patients with SSc-PAH. To screen the candidate biomarkers and potential therapeutic targets for SSc-PAH, we analyzed the data set (GSE33463 and GSE19617) for confirming key genes in peripheral blood mononuclear cells from SSc-PAH patients. A total of 105 SSc patients from gene expression omnibus (GEO) were included as discovery cohort ( = 69) and duplication cohort ( = 36) for screening hub genes by weighted gene co-expression network analysis (WGCNA). Furthermore, an independent validation cohort ( = 40), including healthy controls, SSc and SSc-PAH patients, was used for further validation by quantitative real-time polymerase chain reaction. The results showed that four key genes, including , , , and , may serve as potential biomarkers in SSc-PAH. Also, they could be independent risk factors for SSc-PAH. In conclusion, the four key genes can be expected to become the potential therapeutic targets and early biomarkers for accurate therapy and diagnosis of SSc-PAH in the future, which also provides promising insights into the pathogenesis of SSc-PAH at the molecular level.

摘要

系统性硬化症相关肺动脉高压(SSc-PAH)仍是系统性硬化症相关死亡的主要原因。早期诊断和及时治疗对于降低SSc-PAH患者的死亡率至关重要。为了筛选SSc-PAH的候选生物标志物和潜在治疗靶点,我们分析了数据集(GSE33463和GSE19617)以确认SSc-PAH患者外周血单个核细胞中的关键基因。通过加权基因共表达网络分析(WGCNA),共有105名来自基因表达综合数据库(GEO)的SSc患者被纳入发现队列(n = 69)和重复队列(n = 36)以筛选枢纽基因。此外,一个独立的验证队列(n = 40),包括健康对照、SSc和SSc-PAH患者,用于通过定量实时聚合酶链反应进行进一步验证。结果表明,包括[基因名称1]、[基因名称2]、[基因名称3]和[基因名称4]在内的四个关键基因可能作为SSc-PAH的潜在生物标志物。此外,它们可能是SSc-PAH的独立危险因素。总之,这四个关键基因有望在未来成为SSc-PAH精准治疗和诊断的潜在治疗靶点和早期生物标志物,这也为SSc-PAH发病机制的分子水平研究提供了有前景的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9fc/7393672/3a84dd9e9a5d/fgene-11-00816-g001.jpg

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