Cotta Renato M, Naveira-Cotta Carolina P, Magal Pierre
General Directorate of Nuclear and Technological Development, DGDNTM, Brazilian Navy, Ilha das Cobras, Centro, Rio de Janeiro, RJ CEP 20091-000, Brazil.
Laboratory of Nano & Microfluidics and Microsystems, LabMEMS, Mechanical Engineering Department, POLI & COPPE, UFRJ, Federal University of Rio de Janeiro, Cidade Universitária, Rio de Janeiro, RJ CEP 21945-970, Brazil.
Biology (Basel). 2020 Aug 12;9(8):220. doi: 10.3390/biology9080220.
A SIRU-type epidemic model is employed for the prediction of the COVID-19 epidemy evolution in Brazil, and analyze the influence of public health measures on simulating the control of this infectious disease. The proposed model allows for a time variable functional form of both the transmission rate and the fraction of asymptomatic infectious individuals that become reported symptomatic individuals, to reflect public health interventions, towards the epidemy control. An exponential analytical behavior for the accumulated reported cases evolution is assumed at the onset of the epidemy, for explicitly estimating initial conditions, while a Bayesian inference approach is adopted for the estimation of parameters by employing the direct problem model with the data from the first phase of the epidemy evolution, represented by the time series for the reported cases of infected individuals. The evolution of the COVID-19 epidemy in China is considered for validation purposes, by taking the first part of the dataset of accumulated reported infectious individuals to estimate the related parameters, and retaining the rest of the evolution data for direct comparison with the predicted results. Then, the available data on reported cases in Brazil from 15 February until 29 March, is used for estimating parameters and then predicting the first phase of the epidemy evolution from these initial conditions. The data for the reported cases in Brazil from 30 March until 23 April are reserved for validation of the model. Then, public health interventions are simulated, aimed at evaluating the effects on the disease spreading, by acting on both the transmission rate and the fraction of the total number of the symptomatic infectious individuals, considering time variable exponential behaviors for these two parameters. This first constructed model provides fairly accurate predictions up to day 65 below 5% relative deviation, when the data starts detaching from the theoretical curve. From the simulated public health intervention measures through five different scenarios, it was observed that a combination of careful control of the social distancing relaxation and improved sanitary habits, together with more intensive testing for isolation of symptomatic cases, is essential to achieve the overall control of the disease and avoid a second more strict social distancing intervention. Finally, the full dataset available by the completion of the present work is employed in redefining the model to yield updated epidemy evolution estimates.
采用一种SIRU型流行病模型来预测巴西新冠肺炎疫情的演变,并分析公共卫生措施对模拟控制这种传染病的影响。所提出的模型允许传播率和无症状感染个体转变为有症状报告个体的比例具有时间可变的函数形式,以反映公共卫生干预措施对疫情控制的作用。在疫情开始时,假设累计报告病例演变具有指数分析行为,以便明确估计初始条件,同时采用贝叶斯推理方法,通过使用疫情演变第一阶段的数据(以感染个体报告病例的时间序列表示)的直接问题模型来估计参数。为了验证,考虑了中国新冠肺炎疫情的演变,通过使用累计报告感染个体数据集的第一部分来估计相关参数,并保留其余的演变数据以便与预测结果进行直接比较。然后,利用巴西2月15日至3月29日报告病例的可用数据来估计参数,然后从这些初始条件预测疫情演变的第一阶段。巴西3月30日至4月23日报告病例的数据留作模型验证之用。然后,模拟公共卫生干预措施,通过对传播率和有症状感染个体总数的比例采取行动,考虑这两个参数的时间可变指数行为,来评估对疾病传播的影响。当数据开始偏离理论曲线时,这个首次构建的模型在第65天之前能提供相对偏差低于5%的相当准确的预测。从通过五种不同情景模拟的公共卫生干预措施中观察到,谨慎控制社交距离放松、改善卫生习惯以及加强对有症状病例的隔离检测相结合,对于实现疾病的全面控制并避免再次采取更严格的社交距离干预至关重要。最后,利用本工作完成时可获得的完整数据集重新定义模型,以得出更新的疫情演变估计值。