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基于胸部 CT 的 COVID-19 分类的自适应特征选择引导深度森林

Adaptive Feature Selection Guided Deep Forest for COVID-19 Classification With Chest CT.

出版信息

IEEE J Biomed Health Inform. 2020 Oct;24(10):2798-2805. doi: 10.1109/JBHI.2020.3019505. Epub 2020 Aug 26.

DOI:10.1109/JBHI.2020.3019505
PMID:32845849
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8545164/
Abstract

Chest computed tomography (CT) becomes an effective tool to assist the diagnosis of coronavirus disease-19 (COVID-19). Due to the outbreak of COVID-19 worldwide, using the computed-aided diagnosis technique for COVID-19 classification based on CT images could largely alleviate the burden of clinicians. In this paper, we propose an Adaptive Feature Selection guided Deep Forest (AFS-DF) for COVID-19 classification based on chest CT images. Specifically, we first extract location-specific features from CT images. Then, in order to capture the high-level representation of these features with the relatively small-scale data, we leverage a deep forest model to learn high-level representation of the features. Moreover, we propose a feature selection method based on the trained deep forest model to reduce the redundancy of features, where the feature selection could be adaptively incorporated with the COVID-19 classification model. We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP). The accuracy (ACC), sensitivity (SEN), specificity (SPE), AUC, precision and F1-score achieved by our method are 91.79%, 93.05%, 89.95%, 96.35%, 93.10% and 93.07%, respectively. Experimental results on the COVID-19 dataset suggest that the proposed AFS-DF achieves superior performance in COVID-19 vs. CAP classification, compared with 4 widely used machine learning methods.

摘要

胸部计算机断层扫描(CT)成为辅助诊断 2019 冠状病毒病(COVID-19)的有效工具。由于 COVID-19 在全球范围内的爆发,基于 CT 图像的 COVID-19 分类的计算机辅助诊断技术可以大大减轻临床医生的负担。在本文中,我们提出了一种基于胸部 CT 图像的自适应特征选择引导深度森林(AFS-DF)用于 COVID-19 分类。具体来说,我们首先从 CT 图像中提取位置特定的特征。然后,为了利用相对较小规模的数据捕捉这些特征的高层表示,我们利用深度森林模型学习特征的高层表示。此外,我们提出了一种基于训练好的深度森林模型的特征选择方法,以减少特征的冗余,其中特征选择可以自适应地与 COVID-19 分类模型结合。我们在包含 1495 例 COVID-19 患者和 1027 例社区获得性肺炎(CAP)患者的 COVID-19 数据集上评估了我们提出的 AFS-DF。我们方法的准确率(ACC)、灵敏度(SEN)、特异性(SPE)、AUC、精度和 F1 分数分别为 91.79%、93.05%、89.95%、96.35%、93.10%和 93.07%。在 COVID-19 数据集上的实验结果表明,与 4 种常用的机器学习方法相比,我们提出的 AFS-DF 在 COVID-19 与 CAP 分类中具有更好的性能。