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本文引用的文献

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Incorporating hydrodynamics into spatiotemporal metabolic models of bubble column gas fermentation.将水动力纳入鼓泡塔气体发酵时空代谢模型中。
Biotechnol Bioeng. 2019 Jan;116(1):28-40. doi: 10.1002/bit.26848. Epub 2018 Oct 27.
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Implications of butyrate and its derivatives for gut health and animal production.丁酸及其衍生物对肠道健康和动物生产的影响。
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The path forward for lignocellulose biorefineries: Bottlenecks, solutions, and perspective on commercialization.木质纤维素生物炼制厂的发展方向:瓶颈、解决方案和商业化展望。
Bioresour Technol. 2018 Sep;264:370-381. doi: 10.1016/j.biortech.2018.06.004. Epub 2018 Jun 21.
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Genome-scale metabolic reconstruction and analysis for Clostridium kluyveri.克氏梭菌的基因组规模代谢重建与分析
Genome. 2018 Aug;61(8):605-613. doi: 10.1139/gen-2017-0177. Epub 2018 Jun 19.
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H drives metabolic rearrangements in gas-fermenting .H驱动气体发酵中的代谢重排。
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High Rate Biomethanation of Carbon Monoxide-Rich Gases via a Thermophilic Synthetic Coculture.通过嗜热合成共培养实现富含一氧化碳气体的高速率生物甲烷化
ACS Sustain Chem Eng. 2018 Feb 5;6(2):2169-2176. doi: 10.1021/acssuschemeng.7b03601. Epub 2017 Dec 11.
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Steps towards 'drop-in' biofuels: focusing on metabolic pathways.迈向“即用型”生物燃料的步骤:聚焦代谢途径。
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Maintenance of ATP Homeostasis Triggers Metabolic Shifts in Gas-Fermenting Acetogens.维持 ATP 稳态会引发产乙酸菌的代谢转变。
Cell Syst. 2017 May 24;4(5):505-515.e5. doi: 10.1016/j.cels.2017.04.008. Epub 2017 May 17.
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Arginine deiminase pathway provides ATP and boosts growth of the gas-fermenting acetogen Clostridium autoethanogenum.精氨酸脱亚氨酶途径提供 ATP 并促进产乙酸发酵的产乙酸菌 Clostridium autoethanogenum 的生长。
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10
Metabolic engineering of Clostridium autoethanogenum for selective alcohol production.用于选择性生产乙醇的自养乙醇梭菌的代谢工程。
Metab Eng. 2017 Mar;40:104-114. doi: 10.1016/j.ymben.2017.01.007. Epub 2017 Jan 19.

与单一培养系统相比,细菌共培养系统的代谢模型预测一氧化碳到丁酸盐的转化率会提高。

Metabolic modeling of bacterial co-culture systems predicts enhanced carbon monoxide-to-butyrate conversion compared to monoculture systems.

作者信息

Li Xiangan, Henson Michael A

机构信息

Department of Chemical Engineering and Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA, 01003, USA.

出版信息

Biochem Eng J. 2019 Nov 15;151. doi: 10.1016/j.bej.2019.107338. Epub 2019 Aug 13.

DOI:10.1016/j.bej.2019.107338
PMID:32863734
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7449128/
Abstract

We used metabolic modeling to computationally investigate the potential of bacterial coculture system designs for CO conversion to the platform chemical butyrate. By taking advantage of the native capabilities of wild-type strains, we developed two anaerobic coculture designs by combining for CO-to-acetate conversion with bacterial strains that offer high acetate-to-butyrate conversion capabilities: the environmental bacterium the human gut bacterium. When grown in continuous stirred tank reactor on a 70/0/30 CO/H/N gas mixture, the C. autoethanogenum- co-culture was predicted to offer no mprovement in butyrate volumetric productivity compared to an engineered monoculture despite utilizing vinyl acetate as a secondary carbon source for growth enhancement. A coculture consisting of and engineered in silico to eliminate hexanoate synthesis was predicted to enhance both butyrate productivity and titer. The coculture offered similar improvements in butyrate productivity without the need for metabolic engineering when glucose was provided as a secondary carbon source to enhance growth. A bubble column model developed to assess the potential for large-scale butyrate production of the design predicted that a 40/30/30 CO/H/N gas mixture and a 5 m column length would be preferred to enhance growth and counteract CO inhibitory effects on

摘要

我们使用代谢建模方法,通过计算研究细菌共培养系统设计将一氧化碳转化为平台化学品丁酸盐的潜力。利用野生型菌株的天然能力,我们通过将用于一氧化碳到乙酸盐转化的菌株与具有高乙酸盐到丁酸盐转化能力的细菌菌株相结合,开发了两种厌氧共培养设计:环境细菌和人类肠道细菌。当在连续搅拌釜式反应器中于70/0/30的一氧化碳/氢气/氮气气体混合物中生长时,尽管利用乙酸乙烯酯作为促进生长的二次碳源,但与工程化的单培养相比,自养乙醇梭菌共培养预计在丁酸盐体积生产率方面不会有提高。通过计算机模拟设计的一种由和组成的共培养物,旨在消除己酸盐合成,预计可提高丁酸盐生产率和滴度。当提供葡萄糖作为促进生长的二次碳源时,共培养在无需代谢工程的情况下,在丁酸盐生产率方面有类似的提高。为评估设计的大规模丁酸盐生产潜力而开发的鼓泡塔模型预测,40/30/30的一氧化碳/氢气/氮气气体混合物和5米的塔长将更有利于促进生长并抵消一氧化碳对的抑制作用。