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ADAMTS基因家族mRNA表达在胃癌中的预后价值

Prognostic Values for the mRNA Expression of the ADAMTS Family of Genes in Gastric Cancer.

作者信息

Liang Liang, Zhu Jin-Hui, Chen Gang, Qin Xin-Gan, Chen Jun-Qiang

机构信息

Department of Gastrointestinal Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, China.

Department of Pathology, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, China.

出版信息

J Oncol. 2020 Aug 20;2020:9431560. doi: 10.1155/2020/9431560. eCollection 2020.

Abstract

The "A Disintegrin and Metalloproteinase with Thrombospondin Motif" (ADAMTS) family of genes is involved in the occurrence and development of different cancers. However, the prognostic value of these genes in gastric cancer (GC) has not been revealed. The present study was thus conducted to determine the prognostic value for the ADAMTS family of genes in GC. First, we evaluated the mRNA expression levels of the ADAMTS family in GC patients using a GEPIA dataset. Thereafter, we determined the prognostic value of these genes by analyzing their mRNA level using the Kaplan-Meier Plotter database. The mRNA expression level of ADAMTS12 was randomly validated by qRT-PCR and meta-analysis while its coexpression genes were derived using Coexpedia. Finally, we performed Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses using the OmicShare Tools. Compared to normal tissues, expression of and was significantly higher while that of , , and was significantly lower in GC tissues. According to the RNA-seq and gene chip data, the ADAMTS family (, , , , and ) of genes was closely related to the prognosis of GC, and their high expression levels were associated with poor prognosis and survival time. In addition, was highly expressed in 20 pairs of GC tissues based on RT-PCR (=0.016) and meta-analysis (SMD: 0.73, 95% CI: 0.32-1.14, < 0.001). GO and KEGG pathway analyses indicated that the coexpressed genes were enriched in the pathways of extracellular matrix organization, extracellular matrix structural constituent, extracellular matrix, and protein digestion and absorption. Herein, we discovered the prognostic values and biological roles of the ADAMTS genes in GC.

摘要

“含血小板反应蛋白基序的解聚素和金属蛋白酶”(ADAMTS)基因家族参与不同癌症的发生和发展。然而,这些基因在胃癌(GC)中的预后价值尚未明确。因此,本研究旨在确定ADAMTS基因家族在GC中的预后价值。首先,我们使用GEPIA数据集评估了GC患者中ADAMTS家族的mRNA表达水平。此后,我们通过使用Kaplan-Meier Plotter数据库分析这些基因的mRNA水平来确定其预后价值。通过qRT-PCR和荟萃分析随机验证了ADAMTS12的mRNA表达水平,同时使用Coexpedia推导其共表达基因。最后,我们使用OmicShare工具进行了基因本体(GO)注释和京都基因与基因组百科全书(KEGG)通路富集分析。与正常组织相比,GC组织中 和 的表达显著更高,而 、 和 的表达显著更低。根据RNA测序和基因芯片数据,ADAMTS基因家族( 、 、 、 和 )与GC的预后密切相关,它们的高表达水平与不良预后和生存时间相关。此外,基于RT-PCR( =0.016)和荟萃分析(SMD:0.73,95%CI:0.32 - 1.14, < 0.001), 在20对GC组织中高表达。GO和KEGG通路分析表明, 的共表达基因富集于细胞外基质组织、细胞外基质结构成分、细胞外基质以及蛋白质消化和吸收等通路。在此,我们发现了ADAMTS基因在GC中的预后价值和生物学作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5894/7455834/652fcd2e934d/JO2020-9431560.001.jpg

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