Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, PR China.
College of Basic Medical Sciences, Guilin Medical University, Guilin 541004, PR China.
Int J Syst Evol Microbiol. 2020 Oct;70(10):5445-5452. doi: 10.1099/ijsem.0.004431. Epub 2020 Sep 4.
A Gram-stain-positive, aerobic, catalase-positive, oxidase-negative, non-mycelium-forming, motile, rod-shaped with one polar flagellum actinobacterium, designated E918, was isolated from a desert soil collected in Cholistan desert, Pakistan. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain E918 belonged to the genus and was most closely related to CGMCC 1.15091 (97.2 % similarity). The peptidoglycan was of the A3 type and the whole-cell sugar profile was found to contain galactose. The major menaquinone was MK-9(H). The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and two unidentified glycolipids. The major fatty acids identified were anteiso-C and anteiso-C. The G+C content of the genomic DNA was 68.69 mol%. The digital DNA-DNA hybridization and average nucleotide identity values between strain E918 and CGMCC 1.15091 were 28.0 and 83.4%, respectively. On the basis of its phylogenetic, phenotypic and chemotaxonomic features, strain E918 was considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain of is E918 (=JCM 33392=CGMCC 1.16978).
一株革兰氏阳性、需氧、接触酶阳性、氧化酶阴性、不形成菌丝体、运动、具一根极生鞭毛的棒状放线菌,命名为 E918,从巴基斯坦 Cholistan 沙漠采集的沙漠土壤中分离得到。基于 16S rRNA 基因序列的系统发育分析表明,菌株 E918 属于 属,与 CGMCC 1.15091(97.2%相似度)最为密切相关。肽聚糖为 A3 型,全细胞糖谱中含有半乳糖。主要的menaquinone 为 MK-9(H)。极性脂谱由二磷脂酰甘油、磷脂酰甘油、磷脂酰肌醇和两种未鉴定的糖脂组成。主要脂肪酸为 anteiso-C 和 anteiso-C。基因组 DNA 的 G+C 含量为 68.69 mol%。菌株 E918 与 CGMCC 1.15091 之间的数字 DNA-DNA 杂交和平均核苷酸同一性值分别为 28.0%和 83.4%。基于其系统发育、表型和化学分类特征,菌株 E918 被认为代表了 属的一个新种,因此提议使用 sp. nov. 来命名该新种。的模式菌株为 E918(=JCM 33392=CGMCC 1.16978)。