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从共同进化条件中筛选出的突变体和重组噬菌体可克服噬菌体抗性单核细胞增生李斯特菌。

Mutant and Recombinant Phages Selected from Coevolution Conditions Overcome Phage-Resistant Listeria monocytogenes.

作者信息

Peters Tracey Lee, Song Yaxiong, Bryan Daniel W, Hudson Lauren K, Denes Thomas G

机构信息

Department of Food Science, The University of Tennessee, Knoxville, Tennessee, USA.

Department of Food Science, The University of Tennessee, Knoxville, Tennessee, USA

出版信息

Appl Environ Microbiol. 2020 Oct 28;86(22). doi: 10.1128/AEM.02138-20.

Abstract

Bacteriophages (phages) are currently available for use by the food industry to control the foodborne pathogen Although phage biocontrols are effective under specific conditions, their use can select for phage-resistant bacteria that repopulate phage-treated environments. Here, we performed short-term coevolution experiments to investigate the impact of single phages and a two-phage cocktail on the regrowth of phage-resistant and the adaptation of the phages to overcome this resistance. We used whole-genome sequencing to identify mutations in the target host that confer phage resistance and in the phages that alter host range. We found that infections with phages LP-048, LP-125, or a combination of both select for different populations of phage-resistant bacteria with different regrowth times. Phages isolated from the end of the coevolution experiments were found to have gained the ability to infect phage-resistant mutants of and strains previously found to be broadly resistant to phage infection. Phages isolated from coinfected cultures were identified as recombinants of LP-048 and LP-125. Interestingly, recombination events occurred twice independently in a locus encoding two proteins putatively involved in DNA binding. We show that short-term coevolution of phages and their hosts can be utilized to obtain mutant and recombinant phages with adapted host ranges. These laboratory-evolved phages may be useful for limiting the emergence of phage resistance and for targeting strains that show general resistance to wild-type (WT) phages. is a life-threatening bacterial foodborne pathogen that can persist in food processing facilities for years. Phages can be used to control in food production, but phage-resistant bacterial subpopulations can regrow in phage-treated environments. Coevolution experiments were conducted on a phage-host system to provide insight into the genetic variation that emerges in both the phage and bacterial host under reciprocal selective pressure. As expected, mutations were identified in both phage and host, but additionally, recombination events were shown to have repeatedly occurred between closely related phages that coinfected This study demonstrates that evolution of phages can be utilized to expand the host range and improve the long-term efficacy of phage-based control of This approach may also be applied to other phage-host systems for applications in biocontrol, detection, and phage therapy.

摘要

噬菌体目前可供食品工业用于控制食源性病原体。虽然噬菌体生物防治在特定条件下有效,但其使用可能会选择出对噬菌体具有抗性的细菌,这些细菌会在经过噬菌体处理的环境中重新繁殖。在这里,我们进行了短期共同进化实验,以研究单个噬菌体和双噬菌体混合物对噬菌体抗性细菌再生长的影响,以及噬菌体为克服这种抗性而发生的适应性变化。我们使用全基因组测序来鉴定赋予噬菌体抗性的靶宿主中的突变以及改变宿主范围的噬菌体中的突变。我们发现,用噬菌体LP - 048、LP - 125或两者的组合进行感染,会选择出具有不同再生长时间的不同噬菌体抗性细菌群体。从共同进化实验结束时分离出的噬菌体被发现获得了感染先前被发现对噬菌体感染具有广泛抗性的[具体细菌名称1]和[具体细菌名称2]菌株的噬菌体抗性突变体的能力。从共感染培养物中分离出的噬菌体被鉴定为LP - 048和LP - 125的重组体。有趣的是,重组事件在一个编码两种推测参与DNA结合的蛋白质的基因座中独立发生了两次。我们表明,噬菌体及其宿主的短期共同进化可用于获得具有适应宿主范围的突变体和重组噬菌体。这些在实验室进化的噬菌体可能有助于限制噬菌体抗性的出现,并靶向对野生型(WT)噬菌体表现出普遍抗性的菌株。[具体细菌名称]是一种危及生命的食源性病原体,可在食品加工设施中持续存在数年。噬菌体可用于控制食品生产中的[具体细菌名称],但噬菌体抗性细菌亚群可在经过噬菌体处理的环境中重新生长。在[具体细菌名称]噬菌体 - 宿主系统上进行了共同进化实验,以深入了解在相互选择压力下噬菌体和细菌宿主中出现的遗传变异。正如预期的那样,在噬菌体和宿主中都鉴定出了突变,但此外,还表明在共感染[具体细菌名称]的密切相关噬菌体之间反复发生了重组事件。这项研究表明,噬菌体的进化可用于扩大宿主范围并提高基于噬菌体的[具体细菌名称]控制的长期效果。这种方法也可应用于其他噬菌体 - 宿主系统,用于生物防治、检测和噬菌体治疗。

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