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中国国家基因库数据库(CNGBdb)

CNGBdb: China National GeneBank DataBase.

作者信息

Chen Feng Zhen, You Li Jin, Yang Fan, Wang Li Na, Guo Xue Qin, Gao Fei, Hua Cong, Tan Cong, Fang Lin, Shan Ri Qiang, Zeng Wen Jun, Wang Bo, Wang Ren, Xu Xun, Wei Xiao Feng

机构信息

China National GeneBank, Shenzhen 518120, China.

BGI-Shenzhen, Shenzhen 518083, China.

出版信息

Yi Chuan. 2020 Aug 20;42(8):799-809. doi: 10.16288/j.yczz.20-080.

Abstract

China National GeneBank DataBase (CNGBdb) is a data platform aiming to systematically archiving and sharing of multi-omics data in life science. As the service portal of Bio-informatics Data Center of the core structure, namely, "Three Banks and Two Platforms" of China National GeneBank (CNGB), CNGBdb has the advantages of rich sample resources, data resources, cooperation projects, powerful data computation and analysis capabilities. With the advent of high throughput sequencing technologies, research in life science has entered the big data era, which is in the need of closer international cooperation and data sharing. With the development of China's economy and the increase of investment in life science research, we need to establish a national public platform for data archiving and sharing in life science to promote the systematic management, application and industrial utilization. Currently, CNGBdb can provide genomic data archiving, information search engines, data management and data analysis services. The data schema of CNGBdb has covered projects, samples, experiments, runs, assemblies, variations and sequences. Until May 22, 2020, CNGBdb has archived 2176 research projects and more than 2221 TB sequencing data submitted by researchers globally. In the future, CNGBdb will continue to be dedicated to promoting data sharing in life science research and improving the service capability. CNGBdb website is: https://db.cngb.org/.

摘要

中国国家基因库数据库(CNGBdb)是一个旨在系统存档和共享生命科学多组学数据的数据平台。作为中国国家基因库(CNGB)核心架构“三库两平台”中生物信息数据中心的服务门户,CNGBdb具有样本资源丰富、数据资源丰富、合作项目众多、数据计算与分析能力强大等优势。随着高通量测序技术的出现,生命科学研究进入了大数据时代,这需要更紧密的国际合作和数据共享。随着中国经济的发展以及对生命科学研究投入的增加,我们需要建立一个生命科学数据存档与共享的国家公共平台,以促进系统管理、应用和产业利用。目前,CNGBdb可提供基因组数据存档、信息搜索引擎、数据管理和数据分析服务。CNGBdb的数据模式已涵盖项目、样本、实验、测序运行、组装、变异和序列。截至2020年5月22日,CNGBdb已存档2176个研究项目以及全球研究人员提交的超过2221TB的测序数据。未来,CNGBdb将继续致力于推动生命科学研究中的数据共享并提升服务能力。CNGBdb网站为:https://db.cngb.org/

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