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用于利用噪声PET数据提高图像质量的卷积神经网络。

Convolutional neural networks for improving image quality with noisy PET data.

作者信息

Schaefferkoetter Josh, Yan Jianhua, Ortega Claudia, Sertic Andrew, Lechtman Eli, Eshet Yael, Metser Ur, Veit-Haibach Patrick

机构信息

Joint Department of Medical Imaging, Princess Margaret Hospital, University Health Network, Mount Sinai Hospital and Women's College Hospital, University of Toronto, 610 University Ave, Toronto, ON, M5G 2 M9, Canada.

Siemens Medical Solutions USA, Inc., 810 Innovation Drive, Knoxville, TN, 37932, USA.

出版信息

EJNMMI Res. 2020 Sep 21;10(1):105. doi: 10.1186/s13550-020-00695-1.

Abstract

GOAL

PET is a relatively noisy process compared to other imaging modalities, and sparsity of acquisition data leads to noise in the images. Recent work has focused on machine learning techniques to improve PET images, and this study investigates a deep learning approach to improve the quality of reconstructed image volumes through denoising by a 3D convolution neural network. Potential improvements were evaluated within a clinical context by physician performance in a reading task.

METHODS

A wide range of controlled noise levels was emulated from a set of chest PET data in patients with lung cancer, and a convolutional neural network was trained to denoise the reconstructed images using the full-count reconstructions as the ground truth. The benefits, over conventional Gaussian smoothing, were quantified across all noise levels by observer performance in an image ranking and lesion detection task.

RESULTS

The CNN-denoised images were generally ranked by the physicians equal to or better than the Gaussian-smoothed images for all count levels, with the largest effects observed in the lowest-count image sets. For the CNN-denoised images, overall lesion contrast recovery was 60% and 90% at the 1 and 20 million count levels, respectively. Notwithstanding the reduced lesion contrast recovery in noisy data, the CNN-denoised images also yielded better lesion detectability in low count levels. For example, at 1 million true counts, the average true positive detection rate was around 40% for the CNN-denoised images and 30% for the smoothed images.

CONCLUSION

Significant improvements were found for CNN-denoising for very noisy images, and to some degree for all noise levels. The technique presented here offered however limited benefit for detection performance for images at the count levels routinely encountered in the clinic.

摘要

目标

与其他成像方式相比,正电子发射断层扫描(PET)是一个相对嘈杂的过程,采集数据的稀疏性会导致图像出现噪声。最近的工作集中在机器学习技术以改善PET图像,本研究调查了一种深度学习方法,通过三维卷积神经网络去噪来提高重建图像体积的质量。在临床背景下,通过医生在阅读任务中的表现来评估潜在的改善效果。

方法

从一组肺癌患者的胸部PET数据中模拟出广泛的受控噪声水平,训练一个卷积神经网络,以全计数重建作为基准真值对重建图像进行去噪。通过观察者在图像排序和病变检测任务中的表现,在所有噪声水平上量化与传统高斯平滑相比的益处。

结果

对于所有计数水平,医生对经卷积神经网络去噪的图像的排序通常等于或优于高斯平滑处理的图像,在计数最低的图像集中观察到的效果最为显著。对于经卷积神经网络去噪的图像,在100万计数水平和2000万计数水平时,整体病变对比度恢复分别为60%和90%。尽管在噪声数据中病变对比度恢复有所降低,但经卷积神经网络去噪的图像在低计数水平下也具有更好的病变可检测性。例如,在100万真实计数时,经卷积神经网络去噪的图像的平均真阳性检测率约为40%,而平滑图像为30%。

结论

发现卷积神经网络去噪对于噪声非常大的图像有显著改善,在某种程度上对所有噪声水平都有改善。然而,这里提出的技术对临床常规遇到的计数水平的图像的检测性能益处有限。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c628/7505915/1a0f41c5de26/13550_2020_695_Fig1_HTML.jpg

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