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评估FilmArray肺炎检测板在重症监护病房患者医院获得性肺炎快速诊断中的应用

Evaluation of the FilmArray Pneumonia Panel for Rapid Diagnosis of Hospital-Acquired Pneumonia in Intensive Care Unit Patients.

作者信息

Crémet Lise, Gaborit Benjamin, Bouras Marwan, Drumel Thomas, Guillotin Florian, Poulain Cécile, Persyn Elise, Lakhal Karim, Rozec Bertrand, Vibet Marie-Anne, Roquilly Antoine, Gibaud Sophie

机构信息

Service de Bactériologie-Hygiène, Pôle de Biologie, CHU Nantes, Nantes, France.

Laboratoire UPRES EA3826, IRS2 - Nantes Biotech, Université de Nantes, Nantes, France.

出版信息

Front Microbiol. 2020 Aug 25;11:2080. doi: 10.3389/fmicb.2020.02080. eCollection 2020.

Abstract

The FilmArray Pneumonia Panel (FAPP) is a new multiplex molecular test for hospital-acquired pneumonia (HAP), which can rapidly detect 18 bacteria, 9 viruses, and 7 resistance genes. We aimed to compare the diagnosis performance of FAPP with conventional testing in 100 intensive care unit (ICU) patients who required mechanical ventilation, with clinically suspected HAP. A total of 237 samples [76 bronchoalveolar lavages (BAL) and 82 endotracheal aspirates (ETA) obtained at HAP diagnosis, and 79 ETA obtained during follow-up (ETA)], were analyzed independently by routine microbiology testing and FAPP. 58 patients had paired BAL and ETA. The positivity thresholds of semi-quantified bacteria were 10-10 CFUs/mL or 10 copies/mL for BAL, and 10 CFUs/mL or copies/mL for ETA. Respiratory commensals (, , , ) were the most common pathogens. Discordant results for bacterial identification were observed in 33/76 (43.4%) BAL and 36/82 (43.9%) ETA, and in most cases, FAPP identified one supplemental bacteria (23/33 BAL and 21/36 ETA). An absence of growth, or polybacterial cultures, explained almost equally the majority of the non-detections in culture. No linear relationship was observed between bin and CFUs/mL variables. Concordant results between paired BAL and ETA were obtained in 46/58 (79.3%) patients with FAPP. One of the 17 resistance genes detected with FAPP ( and MREJ) was not confirmed by conventional testing. Overall, FAPP enhanced the positivity rate of diagnostic testing, with increased recognition of coinfections. Implementing this strategy may allow clinicians to make more timely and informed decisions.

摘要

FilmArray肺炎检测板(FAPP)是一种用于医院获得性肺炎(HAP)的新型多重分子检测方法,可快速检测18种细菌、9种病毒和7种耐药基因。我们旨在比较FAPP与传统检测方法对100例需要机械通气且临床疑似HAP的重症监护病房(ICU)患者的诊断性能。共对237份样本[HAP诊断时获得的76份支气管肺泡灌洗(BAL)样本和82份气管内吸出物(ETA)样本,以及随访期间获得的79份ETA样本]进行了常规微生物检测和FAPP独立分析。58例患者有配对的BAL和ETA样本。半定量细菌的阳性阈值为BAL样本10⁻¹⁰CFU/mL或10拷贝/mL,ETA样本10CFU/mL或拷贝/mL。呼吸道共生菌(、、、)是最常见的病原体。在33/76(43.4%)的BAL样本和36/82(43.9%)的ETA样本中观察到细菌鉴定结果不一致,在大多数情况下,FAPP鉴定出一种补充细菌(23/33的BAL样本和21/36的ETA样本)。培养中无生长或多菌培养几乎同样解释了大多数未检测到的情况。在bin和CFU/mL变量之间未观察到线性关系。FAPP在46/58(79.3%)的患者中获得了配对BAL和ETA样本的一致结果。FAPP检测到的17种耐药基因中的一种(和MREJ)未得到传统检测的证实。总体而言,FAPP提高了诊断检测的阳性率,增加了对合并感染的识别。实施该策略可能使临床医生能够做出更及时、明智的决策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d295/7477898/51f12475988d/fmicb-11-02080-g001.jpg

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