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为什么?——以克隆 C 为例的成功铜绿假单胞菌克隆。

Why? - Successful Pseudomonas aeruginosa clones with a focus on clone C.

机构信息

Department of Microbiology, Tumor and Cell Biology, Biomedicum C8, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

Clinic for Paediatric Pneumology, Allergology and Neonatology, Clinical Research Group 'Pseudomonas Genomics', Hannover Medical School, D-30625 Hannover, Germany.

出版信息

FEMS Microbiol Rev. 2020 Nov 24;44(6):740-762. doi: 10.1093/femsre/fuaa029.

Abstract

The environmental species Pseudomonas aeruginosa thrives in a variety of habitats. Within the epidemic population structure of P. aeruginosa, occassionally highly successful clones that are equally capable to succeed in the environment and the human host arise. Framed by a highly conserved core genome, individual members of successful clones are characterized by a high variability in their accessory genome. The abundance of successful clones might be funded in specific features of the core genome or, although not mutually exclusive, in the variability of the accessory genome. In clone C, one of the most predominant clones, the plasmid pKLC102 and the PACGI-1 genomic island are two ubiquitous accessory genetic elements. The conserved transmissible locus of protein quality control (TLPQC) at the border of PACGI-1 is a unique horizontally transferred compository element, which codes predominantly for stress-related cargo gene products such as involved in protein homeostasis. As a hallmark, most TLPQC xenologues possess a core genome equivalent. With elevated temperature tolerance as a characteristic of clone C strains, the unique P. aeruginosa and clone C specific disaggregase ClpG is a major contributor to tolerance. As other successful clones, such as PA14, do not encode the TLPQC locus, ubiquitous denominators of success, if existing, need to be identified.

摘要

铜绿假单胞菌在各种生境中茁壮成长。在铜绿假单胞菌的流行种群结构中,偶尔会出现同样能够在环境和人体宿主中成功生存的高度成功克隆。在高度保守的核心基因组的框架内,成功克隆的个体成员的特征是其辅助基因组具有高度可变性。成功克隆的丰度可能归因于核心基因组的特定特征,或者(尽管并非相互排斥)归因于辅助基因组的可变性。在最主要的克隆之一克隆 C 中,质粒 pKLC102 和 PACGI-1 基因组岛是两个普遍存在的辅助遗传元件。PACGI-1 边界处保守的蛋白质质量控制可传播结构域(TLPQC)是一个独特的水平转移组成元件,主要编码与应激相关的货物基因产物,如参与蛋白质稳态的基因产物。作为一个标志,大多数 TLPQC 异源基因都具有核心基因组的等价物。由于克隆 C 菌株具有较高的温度耐受性,独特的铜绿假单胞菌和克隆 C 特异性解聚酶 ClpG 是耐受的主要贡献者。由于其他成功的克隆,如 PA14,不编码 TLPQC 基因座,如果存在普遍的成功因素,则需要确定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c7d/7685784/490bfd301a3b/fuaa029fig1.jpg

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