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基因家族在:全基因组鉴定、特征分析和表达分析。

Gene Family in : Genome-Wide Identification, Characterization and Expression Analysis.

机构信息

College of Grassland Science, Nanjing Agricultural University, Nanjing 210095, China.

出版信息

Int J Mol Sci. 2020 Sep 27;21(19):7142. doi: 10.3390/ijms21197142.

Abstract

Calcium is an important second messenger in mediating adaptation responses of plants to abiotic and biotic stresses. Calmodulin-like (CML) protein is an important calcium-signaling protein that can sense and decode Ca signal in plants. is a model legume plant; however, investigations of MtCML proteins are limited. Using genome analysis and BLAST database searches, fifty MtCML proteins that possess EF-hand motifs were identified. Phylogenetic analysis showed that CML homologs between , and shared close relationships. Gene structure analysis revealed that these genes contained one to four conserved EF-hand motifs. All are localized to eight chromosomes and underwent gene duplication. In addition, genes were differentially expressed in different tissues of . -acting elements in promoter region and expression analysis revealed the potential response of MtCML protein to abiotic stress and hormones. The results provide a basis of further functional research on the gene family and facilitate their potential use for applications in the genetic improvement on in drought, cold and salt stress environments.

摘要

钙是介导植物适应非生物和生物胁迫的重要第二信使。钙调素样(CML)蛋白是一种重要的钙信号蛋白,能够在植物中感知和解码 Ca 信号。是一种模式豆科植物;然而,对 MtCML 蛋白的研究有限。通过基因组分析和 BLAST 数据库搜索,鉴定出五十种具有 EF 手模体的 MtCML 蛋白。系统发育分析表明,和之间的 CML 同源物具有密切的关系。基因结构分析表明,这些基因包含一到四个保守的 EF 手模体。所有基因都定位于八个染色体上,并发生了基因复制。此外,在不同组织中差异表达。启动子区域的 - 作用元件和表达分析揭示了 MtCML 蛋白对非生物胁迫和激素的潜在响应。这些结果为进一步研究基因家族的功能提供了基础,并为在干旱、寒冷和盐胁迫环境中对基因进行遗传改良的潜在应用提供了便利。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9bdb/7582678/29817b050229/ijms-21-07142-g001.jpg

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