Huang Sai, Huang Zhi, Chen Ping, Feng Cong
Department of Hematology, First Medical Center, Chinese PLA General Hospital, Beijing, China.
School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, United States.
Front Oncol. 2020 Sep 9;10:1648. doi: 10.3389/fonc.2020.01648. eCollection 2020.
Acute myeloid leukemia (AML), which starts in the bone marrow, is a group of hematopoietic stem cell disorders. Chloride intracellular channel 4 (CLIC4) is regulated by p53, c-Myc, and TGF-β. It induces the NF-κB-dependent activation of HIF (hypoxia-inducible factor) and participates in tumor growth through its microenvironmental function. However, its prognostic value in AML remains unclear, as well as its co-expression biomarkers. In this study, we evaluated the prognostic significance of expression using two independent large cohorts of cytogenetically normal AML (CN-AML) patients. Multivariable analysis and multi-omics analysis with weighted correlation network analysis (WGCNA) in the CN-AML group were also presented. Based on and its related genes, microRNA-target gene interaction network analysis and downstream gene ontology analysis were performed to unveil the complex functions behind . We demonstrated that the overexpression of was notably associated with unfavorable outcome in the two independent cohorts of CN-AML patients [overall survival (OS) and event-free survival (EFS): < 0.0001, = 185; OS: = 0.016, = 232], as well as in the European LeukemiaNet (ELN) Intermediate-I group (OS: = 0.015, EFS: = 0.012, = 115), the National Comprehensive Cancer Network Intermediate Risk AML group (OS and EFS: < 0.0001, = 225), and the non-M3 AML group (OS and EFS: < 0.0001, = 435). Multivariable analysis further validated as a high-risk factor in the CN-AML group. Multi-omics analysis presented the overexpression of as associated with the co-expression of the different gene sets in leukemia, up/downregulation of the immune-related pathways, dysregulation of microRNAs, and hypermethylation around the CpG islands, in open sea regions, and in different gene structural fragments including TSS1500, gene body, 5'UTR region, 3'UTR region, and the first exon. By further performing WGCNA on multi-omics data, certain biomarkers that are co-expressed with were also unveiled. We demonstrated that is a novel, potential unfavorable prognosticator and therapeutic target for CN-AML. As having a key role in CN-AML, the interactions between and other genomics and transcriptomics data were confirmed by performing microRNA-target gene interaction network analysis and gene ontology enrichment analysis. The experimental result provides evidence for the clinical strategy selection of CN-AML patients.
急性髓系白血病(AML)起源于骨髓,是一组造血干细胞疾病。氯离子细胞内通道4(CLIC4)受p53、c-Myc和转化生长因子-β(TGF-β)调控。它诱导缺氧诱导因子(HIF)依赖核因子-κB(NF-κB)的激活,并通过其微环境功能参与肿瘤生长。然而,其在AML中的预后价值以及共表达生物标志物仍不清楚。在本研究中,我们使用两个独立的细胞遗传学正常AML(CN-AML)患者大样本队列评估了[具体基因名称未给出]表达的预后意义。还展示了在CN-AML组中进行的多变量分析以及加权基因共表达网络分析(WGCNA)的多组学分析。基于[具体基因名称未给出]及其相关基因,进行了微小RNA-靶基因相互作用网络分析和下游基因本体分析,以揭示[具体基因名称未给出]背后的复杂功能。我们证明,在两个独立的CN-AML患者队列中,[具体基因名称未给出]的过表达与不良预后显著相关[总生存期(OS)和无事件生存期(EFS):P<0.0001,n = 185;OS:P = 0.016,n = 232],在欧洲白血病网络(ELN)中危-I组(OS:P = 0.015,EFS:P = 0.012,n = 115)、美国国立综合癌症网络中危AML组(OS和EFS:P<0.0001,n = 225)以及非M3 AML组(OS和EFS:P<0.0001,n = 435)中也是如此。多变量分析进一步验证了[具体基因名称未给出]是CN-AML组中的一个高危因素。多组学分析显示,[具体基因名称未给出]的过表达与白血病中不同基因集的共表达、免疫相关通路的上调/下调、微小RNA的失调以及CpG岛周围、开阔海域和包括转录起始位点上游1500bp区域(TSS1500)、基因体、5'非翻译区(5'UTR)区域、3'非翻译区(3'UTR)区域和第一个外显子在内的不同基因结构片段的高甲基化有关。通过对多组学数据进一步进行WGCNA,还揭示了与[具体基因名称未给出]共表达的某些生物标志物。我们证明,[具体基因名称未给出]是CN-AML一种新的、潜在的不良预后指标和治疗靶点。由于[具体基因名称未给出]在CN-AML中起关键作用,通过进行微小RNA-靶基因相互作用网络分析和基因本体富集分析,证实了[具体基因名称未给出]与其他基因组学和转录组学数据之间的相互作用。实验结果为CN-AML患者的临床策略选择提供了证据。