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基于生物信息学分析鉴定间变性甲状腺癌的枢纽基因。

Identification of Hub Genes in Anaplastic Thyroid Carcinoma: Evidence From Bioinformatics Analysis.

机构信息

Department of Thyroid and Breast Surgery, the Affiliated Hospital of Jiangnan University, Wuxi, People's Republic of China.

出版信息

Technol Cancer Res Treat. 2020 Jan-Dec;19:1533033820962135. doi: 10.1177/1533033820962135.

DOI:10.1177/1533033820962135
PMID:33025856
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7545761/
Abstract

Anaplastic thyroid carcinoma (ATC) is a rare type of thyroid cancer that results in fatal clinical outcomes; the pathogenesis of this life-threatening disease has yet to be fully elucidated. This study aims to identify the hub genes of ATC that may play key roles in ATC development and could serve as prognostic biomarkers or therapeutic targets. Two microarray datasets (GSE33630 and GSE53072) were obtained from the Gene Expression Omnibus database; these sets included 16 ATC and 49 normal thyroid samples. Differential expression analyses were performed for each dataset, and 420 genes were screened as common differentially expressed genes using the robust rank aggregation method. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were conducted to explore the potential bio-functions of these differentially expressed genes (DEGs). The terms and enriched pathways were primarily associated with cell cycle, cell adhesion, and cancer-related signaling pathways. Furthermore, a protein-protein interaction network of DEG expression products was constructed using Cytoscape. Based on the whole network, we identified 7 hub genes that included , , , , , , and . The expression levels of these hub genes were validated using quantitative polymerase chain reaction analyses of clinical specimens. In conclusion, the present study identified several key genes that are involved in ATC development and provides novel insights into the understanding of the molecular mechanisms of ATC development.

摘要

间变性甲状腺癌(ATC)是一种罕见的甲状腺癌,导致致命的临床后果;这种危及生命的疾病的发病机制尚未完全阐明。本研究旨在鉴定 ATC 的枢纽基因,这些基因可能在 ATC 的发展中发挥关键作用,并可作为预后生物标志物或治疗靶点。从基因表达综合数据库中获得了两个微阵列数据集(GSE33630 和 GSE53072);这些数据集包括 16 个 ATC 和 49 个正常甲状腺样本。对每个数据集进行差异表达分析,并使用稳健秩聚合方法筛选出 420 个常见差异表达基因。进行了基因本体论和京都基因与基因组百科全书富集分析,以探讨这些差异表达基因(DEGs)的潜在生物功能。这些术语和富集途径主要与细胞周期、细胞黏附和癌症相关的信号通路有关。此外,还使用 Cytoscape 构建了 DEG 表达产物的蛋白质-蛋白质相互作用网络。基于整个网络,我们确定了 7 个枢纽基因,包括、、、、、、和。使用临床标本的定量聚合酶链反应分析验证了这些枢纽基因的表达水平。总之,本研究鉴定了几个参与 ATC 发展的关键基因,为理解 ATC 发展的分子机制提供了新的见解。

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Cancers (Basel). 2025 Jan 15;17(2):262. doi: 10.3390/cancers17020262.
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