Suppr超能文献

TMEM158 可能是间变性甲状腺癌的诊断生物标志物:一项综合生物信息学分析。

TMEM158 May Serve as a Diagnostic Biomarker for Anaplastic Thyroid Carcinoma: An Integrated Bioinformatic Analysis.

机构信息

Department of Thyroid and Breast Surgery, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China.

Department of Orthopedics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China.

出版信息

Curr Med Sci. 2020 Dec;40(6):1137-1147. doi: 10.1007/s11596-020-2296-8. Epub 2021 Jan 11.

Abstract

Anaplastic thyroid carcinoma (ATC) is a rare but extremely lethal malignancy. However, little is known about the pathogenesis of ATC. Given its high mortality, it is critical to improve our understanding of ATC pathogenesis and to find new diagnostic biomarkers. In the present study, two gene microarray profiles (GSE53072 and GSE65144), which included 17 ATC and 17 adjacent non-tumorous tissues, were obtained. Bioinformatic analyses were then performed. Immunohistochemistry (IHC) and receiver operating characteristic (ROC) curves were then used to detect transmembrane protein 158 (TMEM158) expression and to assess diagnostic sensitivity. A total of 372 differentially expressed genes (DEGs) were identified. Through protein-protein interaction (PPI) analysis, we identified a significant module with 37 upregulated genes. Most of the genes in this module were related to cell-cycle processes. After co-expression analysis, 132 hub genes were selected for further study. Nine genes were identified as both DEGs and genes of interest in the weighted gene co-expression network analysis (WGCNA). IHC and ROC curves confirmed that TMEM158 was overexpressed in ATC tissue as compared with other types of thyroid cancer and normal tissue samples. We identified 8 KEGG pathways that were associated with high expression of TMEM158, including aminoacyl-tRNA biosynthesis and DNA replication. Our results suggest that TMEM158 may be a potential oncogene and serve as a diagnostic indicator for ATC.

摘要

间变性甲状腺癌(ATC)是一种罕见但极其致命的恶性肿瘤。然而,对于 ATC 的发病机制知之甚少。鉴于其高死亡率,了解 ATC 的发病机制并找到新的诊断生物标志物至关重要。本研究获得了包含 17 例 ATC 和 17 例相邻非肿瘤组织的两个基因微阵列谱(GSE53072 和 GSE65144)。然后进行了生物信息学分析。然后使用免疫组织化学(IHC)和接收者操作特征(ROC)曲线来检测跨膜蛋白 158(TMEM158)的表达并评估诊断敏感性。鉴定出 372 个差异表达基因(DEGs)。通过蛋白质-蛋白质相互作用(PPI)分析,我们鉴定出一个具有 37 个上调基因的显着模块。该模块中的大多数基因与细胞周期过程有关。经过共表达分析,选择了 132 个枢纽基因进行进一步研究。在加权基因共表达网络分析(WGCNA)中,有 9 个基因被鉴定为既是 DEG 又是感兴趣的基因。IHC 和 ROC 曲线证实,与其他类型的甲状腺癌和正常组织样本相比,TMEM158 在 ATC 组织中过度表达。我们确定了与 TMEM158 高表达相关的 8 个 KEGG 途径,包括氨酰-tRNA 生物合成和 DNA 复制。我们的研究结果表明,TMEM158 可能是一种潜在的癌基因,并可作为 ATC 的诊断指标。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验