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Where the Wild Things Are: Transposable Elements as Drivers of Structural and Functional Variations in the Wheat Genome.《野兽国》:转座元件作为小麦基因组结构和功能变异的驱动因素
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本文引用的文献

1
The Evolutionary Dynamics of a Novel Miniature Transposable Element in the Wheat Genome.小麦基因组中一种新型微型转座元件的进化动力学
Front Plant Sci. 2020 Jul 31;11:1173. doi: 10.3389/fpls.2020.01173. eCollection 2020.
2
The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms.《测序普通小麦基因组:三国鼎立的故事》
Genomics Proteomics Bioinformatics. 2020 Jun;18(3):221-229. doi: 10.1016/j.gpb.2019.09.005. Epub 2020 Jun 17.
3
Wheat chromatin architecture is organized in genome territories and transcription factories.小麦染色质结构组织在基因组区域和转录工厂中。
Genome Biol. 2020 Apr 29;21(1):104. doi: 10.1186/s13059-020-01998-1.
4
Identification and characterization of large-scale genomic rearrangements during wheat evolution.小麦进化过程中大规模基因组重排的鉴定和特征分析。
PLoS One. 2020 Apr 14;15(4):e0231323. doi: 10.1371/journal.pone.0231323. eCollection 2020.
5
Miniature inverted-repeat transposable elements (MITEs), derived insertional polymorphism as a tool of marker systems for molecular plant breeding.微型反向重复转座元件 (MITEs),衍生插入多态性作为分子植物育种标记系统的工具。
Mol Biol Rep. 2020 Apr;47(4):3155-3167. doi: 10.1007/s11033-020-05365-y. Epub 2020 Mar 11.
6
Integrating transposable elements in the 3D genome.转座元件在三维基因组中的整合。
Mob DNA. 2020 Feb 4;11:8. doi: 10.1186/s13100-020-0202-3. eCollection 2020.
7
Domestication of High-Copy Transposons Underlays the Wheat Small RNA Response to an Obligate Pathogen.高拷贝转座子的驯化是小麦小 RNA 对专性病原菌反应的基础。
Mol Biol Evol. 2020 Mar 1;37(3):839-848. doi: 10.1093/molbev/msz272.
8
A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat.在编码 5-甲酰四氢叶酸的小麦基因的编码序列中发现了一种新型微型转座子样元件。
BMC Plant Biol. 2019 Nov 1;19(1):461. doi: 10.1186/s12870-019-2034-1.
9
Re-acquisition of the brittle rachis trait via a transposon insertion in domestication gene Q during wheat de-domestication.通过在小麦去驯化过程中驯化基因 Q 中的转座子插入重新获得脆性茎秆特性。
New Phytol. 2019 Oct;224(2):961-973. doi: 10.1111/nph.15977. Epub 2019 Jul 11.
10
On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements.垃圾的种群动态:转座元件种群基因组学综述。
Genes (Basel). 2019 May 30;10(6):419. doi: 10.3390/genes10060419.

《野兽国》:转座元件作为小麦基因组结构和功能变异的驱动因素

Where the Wild Things Are: Transposable Elements as Drivers of Structural and Functional Variations in the Wheat Genome.

作者信息

Bariah Inbar, Keidar-Friedman Danielle, Kashkush Khalil

机构信息

Department of Life Sciences, Ben-Gurion University, Beer-Sheva, Israel.

出版信息

Front Plant Sci. 2020 Sep 18;11:585515. doi: 10.3389/fpls.2020.585515. eCollection 2020.

DOI:10.3389/fpls.2020.585515
PMID:33072155
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7530836/
Abstract

Transposable elements (TEs) are major contributors to genome plasticity and thus are likely to have a dramatic impact on genetic diversity and speciation. Recent technological developments facilitated the sequencing and assembly of the wheat genome, opening the gate for whole genome analysis of TEs in wheat, which occupy over 80% of the genome. Questions that have been long unanswered regarding TE dynamics throughout the evolution of wheat, are now being addressed more easily, while new questions are rising. In this review, we discuss recent advances in the field of TE dynamics in wheat and possible future directions.

摘要

转座元件(TEs)是基因组可塑性的主要贡献者,因此可能对遗传多样性和物种形成产生巨大影响。最近的技术发展促进了小麦基因组的测序和组装,为小麦中转座元件的全基因组分析打开了大门,这些转座元件占据了基因组的80%以上。长期以来关于小麦整个进化过程中转座元件动态的未解决问题,现在更容易得到解答,同时新的问题也在不断出现。在这篇综述中,我们讨论了小麦中转座元件动态领域的最新进展以及可能的未来发展方向。