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从小鼠中分离出的约氏乳杆菌NCK2677的全基因组序列

Complete Genome Sequence of Lactobacillus johnsonii NCK2677, Isolated from Mice.

作者信息

O'Flaherty Sarah, Foley Matthew H, Rivera Alissa J, Theriot Casey M, Barrangou Rodolphe

机构信息

Department of Food, Bioprocessing, and Nutrition Sciences, North Carolina State University, Raleigh, North Carolina, USA.

College of Veterinary Medicine, Department of Population Health and Pathobiology, North Carolina State University, Raleigh, North Carolina, USA.

出版信息

Microbiol Resour Announc. 2020 Oct 22;9(43):e00918-20. doi: 10.1128/MRA.00918-20.

DOI:10.1128/MRA.00918-20
PMID:33093042
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7585840/
Abstract

We report the closed genome sequence of a strain (NCK2677) that was isolated from a cefoperazone-treated mouse model designed for the study of infection. Illumina and Nanopore sequencing reads were assembled into a circular 1,951,416-bp chromosome with a G+C content of 34.7%, containing 1,865 genes.

摘要

我们报告了从用于研究感染的头孢哌酮治疗小鼠模型中分离出的一株菌株(NCK2677)的封闭基因组序列。Illumina和Nanopore测序读数被组装成一个1,951,416 bp的环状染色体,G+C含量为34.7%,包含1,865个基因。

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本文引用的文献

1
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq:原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
2
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
3
Fast and accurate de novo genome assembly from long uncorrected reads.从长的未校正读段中进行快速且准确的从头基因组组装。
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
4
Cefoperazone-treated Mouse Model of Clinically-relevant Clostridium difficile Strain R20291.用头孢哌酮治疗的具有临床相关性的艰难梭菌菌株R20291小鼠模型。
J Vis Exp. 2016 Dec 10(118):54850. doi: 10.3791/54850.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.Minimap和miniasm:用于有噪声长序列的快速映射和从头组装。
Bioinformatics. 2016 Jul 15;32(14):2103-10. doi: 10.1093/bioinformatics/btw152. Epub 2016 Mar 19.
7
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon:一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
Cefoperazone-treated mice as an experimental platform to assess differential virulence of Clostridium difficile strains.以头孢哌酮处理的小鼠作为实验平台来评估艰难梭菌菌株的差异毒力。
Gut Microbes. 2011 Nov-Dec;2(6):326-34. doi: 10.4161/gmic.19142. Epub 2011 Nov 1.