从多环芳烃污染土壤中分离出的蒽降解菌株费氏分枝杆菌LB501T的全基因组序列草图
Draft Whole-Genome Sequence of the Anthracene-Degrading Strain Mycolicibacterium frederiksbergense LB501T, Isolated from a Polycyclic Aromatic Hydrocarbon-Contaminated Soil.
作者信息
Augelletti Floriana, Tremblay Julien, Agathos Spiros N, Jousset Alexandre, Stenuit Ben
机构信息
Earth & Life Institute, Laboratory of Bioengineering, Catholic University of Louvain, Louvain-la-Neuve, Belgium.
Energy, Mining and Environment, National Research Council Canada, Montreal, Quebec, Canada.
出版信息
Microbiol Resour Announc. 2020 Oct 22;9(43):e00671-20. doi: 10.1128/MRA.00671-20.
Abstract
Here, we report the draft whole-genome sequence of an anthracene-degrading bacterium, strain LB501T, using the PacBio and Illumina sequencing platforms. The complete genome sequence of strain LB501T consists of 6,713,618 bp and provides new insights into its metabolic capabilities, including aromatic conversion pathways with promiscuous activities.
摘要
在此，我们报告了一株蒽降解细菌LB501T菌株的全基因组序列草图，该序列通过PacBio和Illumina测序平台获得。LB501T菌株的完整基因组序列由6,713,618个碱基对组成，并为其代谢能力提供了新的见解，包括具有混杂活性的芳香族化合物转化途径。
相似文献
1
Draft Whole-Genome Sequence of the Anthracene-Degrading Strain Mycolicibacterium frederiksbergense LB501T, Isolated from a Polycyclic Aromatic Hydrocarbon-Contaminated Soil.从多环芳烃污染土壤中分离出的蒽降解菌株费氏分枝杆菌LB501T的全基因组序列草图
Microbiol Resour Announc. 2020 Oct 22;9(43):e00671-20. doi: 10.1128/MRA.00671-20.
2
Characterization of multiple-substrate utilization by anthracene-degrading Mycobacterium frederiksbergense LB501T.降解蒽的费氏分枝杆菌LB501T对多种底物利用的特性分析
Appl Environ Microbiol. 2003 Oct;69(10):6133-42. doi: 10.1128/AEM.69.10.6133-6142.2003.
3
Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii.来自夏威夷石油污染土壤的多环芳烃降解细菌红分枝杆菌JS14(T)的基因组序列草图
Stand Genomic Sci. 2016 Aug 2;11:47. doi: 10.1186/s40793-016-0167-5. eCollection 2016.
4
Draft Whole-Genome Sequence of the Fluorene-Degrading Sphingobium sp. Strain LB126, Isolated from Polycyclic Aromatic Hydrocarbon-Contaminated Soil.从多环芳烃污染土壤中分离出的芴降解鞘氨醇单胞菌LB126菌株的全基因组序列草图
Genome Announc. 2018 Apr 12;6(15):e00249-18. doi: 10.1128/genomeA.00249-18.
5
Draft Genome Sequence of Pannonibacter phragmitetus Strain CGMCC9175, a Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Bacterium.芦苇泛菌CGMCC9175菌株的基因组序列草图，该菌株为耐盐多环芳烃降解菌
Genome Announc. 2016 Jan 28;4(1):e01675-15. doi: 10.1128/genomeA.01675-15.
6
Draft Genome Sequence of Sphingobium sp. Strain KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Isolated from Cattle Pasture Soil.鞘氨醇单胞菌属菌株KK22的基因组草图序列，该菌株是从牧场土壤中分离出的一种能降解高分子量多环芳烃的细菌。
Genome Announc. 2013 Nov 7;1(6):e00911-13. doi: 10.1128/genomeA.00911-13.
7
Draft Genome Sequence of Advenella kashmirensis Strain W13003, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium.多环芳烃降解细菌克什米尔阿德韦内拉菌W13003菌株的基因组序列草图
Genome Announc. 2014 Jan 30;2(1):e00003-14. doi: 10.1128/genomeA.00003-14.
8
Draft Genome Sequence of Ochrobactrum anthropi Strain W13P3, a Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Bacterium.嗜盐碱嗜环菌W13P3菌株的基因组草图序列，一种耐盐多环芳烃降解细菌。
Genome Announc. 2015 Jul 30;3(4):e00867-15. doi: 10.1128/genomeA.00867-15.
9
Mycobacterium frederiksbergense sp. nov., a novel polycyclic aromatic hydrocarbon-degrading Mycobacterium species.弗雷德里克斯贝格分枝杆菌新种，一种新型的可降解多环芳烃的分枝杆菌物种。
Int J Syst Evol Microbiol. 2001 Sep;51(Pt 5):1715-1722. doi: 10.1099/00207713-51-5-1715.
10
Draft Genome Sequence of Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Pseudomonas bauzanensis Strain W13Z2.耐盐多环芳烃降解鲍氏假单胞菌菌株W13Z2的基因组序列草图
Genome Announc. 2014 Oct 16;2(5):e01049-14. doi: 10.1128/genomeA.01049-14.
引用本文的文献
1
Characterization of three rapidly growing novel species with significant polycyclic aromatic hydrocarbon bioremediation potential.三种具有显著多环芳烃生物修复潜力的快速生长新物种的特性分析。
Front Microbiol. 2023 Sep 8;14:1225746. doi: 10.3389/fmicb.2023.1225746. eCollection 2023.
2
Effect of Heavy-Metal-Resistant PGPR Inoculants on Growth, Rhizosphere Microbiome and Remediation Potential of in Zinc-Contaminated Soil.抗重金属植物根际促生菌接种剂对锌污染土壤中植物生长、根际微生物群落及修复潜力的影响
Microorganisms. 2023 Jun 7;11(6):1516. doi: 10.3390/microorganisms11061516.
本文引用的文献
1
Harnessing the Power of Enzymes for Tailoring and Valorizing Lignin.利用酶的力量来定制和增值木质素。
Trends Biotechnol. 2020 Nov;38(11):1215-1231. doi: 10.1016/j.tibtech.2020.03.010. Epub 2020 May 15.
2
Key Transitions in the Evolution of Rapid and Slow Growing Identified by Comparative Genomics.通过比较基因组学确定的快速生长和缓慢生长进化中的关键转变。
Front Microbiol. 2020 Jan 21;10:3019. doi: 10.3389/fmicb.2019.03019. eCollection 2019.
3
Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus into an Emended Genus and Four Novel Genera.系统发育基因组学和比较基因组学研究有力支持将该属划分为一个修订后的属和四个新属。
Front Microbiol. 2018 Feb 13;9:67. doi: 10.3389/fmicb.2018.00067. eCollection 2018.
4
Characterization of a polycyclic aromatic ring-hydroxylation dioxygenase from Mycobacterium sp. NJS-P.来自分枝杆菌属NJS-P的多环芳烃环羟基化双加氧酶的特性分析
Chemosphere. 2017 Oct;185:67-74. doi: 10.1016/j.chemosphere.2017.07.001. Epub 2017 Jul 2.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.SSPACE-LongRead：利用长读段序列信息搭建细菌草图基因组支架
BMC Bioinformatics. 2014 Jun 20;15:211. doi: 10.1186/1471-2105-15-211.
7
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
8
The Sequence Alignment/Map format and SAMtools.序列比对/映射格式和 SAMtools。
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
9
Genomic analysis of polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1.范巴伦分枝杆菌PYR-1中多环芳烃降解的基因组分析
Biodegradation. 2008 Nov;19(6):859-81. doi: 10.1007/s10532-008-9189-z. Epub 2008 Apr 18.
10
A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases.细菌里氏非血红素铁芳香环羟化加氧酶的一种新分类系统。
BMC Biochem. 2008 Apr 3;9:11. doi: 10.1186/1471-2091-9-11.
Zotero 插件