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黄芪甲苷 II、黄芪甲苷 III 和黄芪甲苷 IV 化合物抗登革热病毒的活性:计算对接和体外研究。

Antiviral activity of astragaloside II, astragaloside III and astragaloside IV compounds against dengue virus: Computational docking and in vitro studies.

机构信息

Department of Microbiology and Biotechnology, Presidency College (Autonomous), Affiliated to University of Madras, Chennai, Tamil Nadu, India; Bioinformatics Infrastructure Facility (BIF) Centre, Presidency College (Autonomous), Affiliated to University of Madras, Chennai, Tamil Nadu, India.

Department of Microbiology and Biotechnology, Presidency College (Autonomous), Affiliated to University of Madras, Chennai, Tamil Nadu, India; Central Research Laboratory, Meenakshi Academy of Higher Education and Research (Deemed to Be University), Chennai, Tamil Nadu, India.

出版信息

Microb Pathog. 2021 Mar;152:104563. doi: 10.1016/j.micpath.2020.104563. Epub 2020 Oct 22.

Abstract

This study was aimed to identify the phytocompounds possessing anti-dengue virus activity using in silico and in vitro approaches. A total of 7000 phytocompounds were virtually screened against protein targets (envelope, NS2b/NS3, and NS5) of dengue virus using iGEMDOCK and individually docked using Maestro 10.7 module of Schrödinger software. In vitro cytotoxicity and antiviral studies were performed using vero cell line. Finally, three phytocompounds namely astragaloside II, astragaloside III, and astragaloside IV were screened based on their highest binding energy values against protein targets. Astragaloside III exhibited the highest interaction energy value of -8.718 kcal/mol and -8.447 kcal/mol against envelope, and NS2b/NS3 targets, respectively. Astragaloside IV exhibited -7.244 kcal/mol against SAM site, and -9.179 kcal/mol against RNA cap site of NS5 targets. In silico ADMET analysis revealed that astragaloside II, III, and IV were non-mutagenic and non-carcinogenic in nature and these compounds were also non-toxic to vero cells upto 1000 μg/mL. Against dengue virus serotype 3, astragaloside II exhibited substantial antiviral activity at the concentration of 1.56 μg/mL followed by astragaloside III at 6.25 μg/mL and astragaloside IV at 12.5 μg/mL. Also, against dengue serotype 1, astragaloside II showed the maximum antiviral activity at 1.56 μg/mL followed by astragaloside III and IV at 3.125 μg/mL. This study concludes that astragaloside II, III, and IV compounds had potential in vitro anti-dengue virus activity.

摘要

本研究旨在通过计算和体外方法鉴定具有抗登革热病毒活性的植物化合物。使用 iGEMDOCK 对 7000 种植物化合物进行虚拟筛选,以对抗登革热病毒的蛋白靶标(包膜、NS2b/NS3 和 NS5),并使用 Schrödinger 软件的 Maestro 10.7 模块分别对接。在体外使用vero 细胞系进行细胞毒性和抗病毒研究。最后,根据与蛋白靶标结合的最高结合能值,筛选出三种植物化合物,即黄芪甲苷 II、黄芪甲苷 III 和黄芪甲苷 IV。黄芪甲苷 III 对包膜和 NS2b/NS3 靶标表现出最高的相互作用能值,分别为-8.718 kcal/mol 和-8.447 kcal/mol。黄芪甲苷 IV 对 SAM 位点的抑制活性为-7.244 kcal/mol,对 NS5 靶标 RNA 帽位点的抑制活性为-9.179 kcal/mol。计算的 ADMET 分析表明,黄芪甲苷 II、III 和 IV 在性质上是非致突变和非致癌的,并且这些化合物在高达 1000μg/mL 的浓度下对 vero 细胞也没有毒性。对于登革热病毒 3 型,黄芪甲苷 II 在 1.56μg/mL 的浓度下表现出显著的抗病毒活性,其次是黄芪甲苷 III(6.25μg/mL)和黄芪甲苷 IV(12.5μg/mL)。此外,对于登革热血清型 1,黄芪甲苷 II 在 1.56μg/mL 的浓度下表现出最大的抗病毒活性,其次是黄芪甲苷 III 和 IV(3.125μg/mL)。本研究表明,黄芪甲苷 II、III 和 IV 类化合物具有体外抗登革热病毒活性。

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