Thomas Camille, Francke Alexander, Vogel Hendrik, Wagner Bernd, Ariztegui Daniel
Department of Earth Sciences, University of Geneva, 1205 Geneva, Switzerland.
Department of Earth Sciences, University of Adelaide, 5005 Adelaide, Australia.
Microorganisms. 2020 Nov 5;8(11):1736. doi: 10.3390/microorganisms8111736.
Lacustrine sediments are widely used to investigate the impact of climatic change on biogeochemical cycling. In these sediments, subsurface microbial communities are major actors of this cycling but can also affect the sedimentary record and overprint the original paleoenvironmental signal. We therefore investigated the subsurface microbial communities of the oldest lake in Europe, Lake Ohrid (North Macedonia, Albania), to assess the potential connection between microbial diversity and past environmental change using 16S rRNA gene sequences. Along the upper ca. 200 m of the DEEP site sediment record spanning ca. 515 thousand years (ka), our results show that Atribacteria, Bathyarchaeia and Gammaproteobacteria structured the community independently from each other. Except for the latter, these taxa are common in deep lacustrine and marine sediments due to their metabolic versatility adapted to low energy environments. Gammaproteobacteria were often co-occurring with cyanobacterial sequences or soil-related OTUs suggesting preservation of ancient DNA from the water column or catchment back to at least 340 ka, particularly in dry glacial intervals. We found significant environmental parameters influencing the overall microbial community distribution, but no strong relationship with given phylotypes and paleoclimatic signals or sediment age. Our results support a weak recording of early diagenetic processes and their actors by bulk prokaryotic sedimentary DNA in Lake Ohrid, replaced by specialized low-energy clades of the deep biosphere and a marked imprint of erosional processes on the subsurface DNA pool of Lake Ohrid.
湖相沉积物被广泛用于研究气候变化对生物地球化学循环的影响。在这些沉积物中,地下微生物群落是这种循环的主要参与者,但也会影响沉积记录并覆盖原始的古环境信号。因此,我们研究了欧洲最古老的湖泊奥赫里德湖(北马其顿、阿尔巴尼亚)的地下微生物群落,以利用16S rRNA基因序列评估微生物多样性与过去环境变化之间的潜在联系。沿着深度站点沉积物记录的上部约200米,该记录跨越约51.5万年,我们的结果表明,阿托氏菌属、深古菌门和γ-变形菌门彼此独立地构建了群落结构。除了后者,由于这些分类群具有适应低能量环境的代谢多样性,它们在深层湖相和海洋沉积物中很常见。γ-变形菌门通常与蓝藻序列或与土壤相关的操作分类单元同时出现,这表明至少在34万年以来,水柱或集水区中的古代DNA得以保存,特别是在干燥的冰期。我们发现有显著的环境参数影响着整体微生物群落分布,但与特定的系统发育型以及古气候信号或沉积物年龄没有很强的关系。我们的结果支持了在奥赫里德湖中,大量原核生物沉积DNA对早期成岩过程及其参与者的记录较弱,取而代之的是深层生物圈中专门的低能量进化枝以及侵蚀过程对奥赫里德湖地下DNA库的显著印记。