BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Faculty of Sciences, Ghent University, K.L. Ledeganckstraat 35. B-9000 Ghent, Belgium.
Center for Industrial Biotechnology Studies, Faculty of Exact and Natural Sciences. University of Oriente, Patricio Lumumba, Santiago de Cuba 90500, Cuba.
Int J Syst Evol Microbiol. 2020 Dec;70(12):6428-6436. doi: 10.1099/ijsem.0.004554.
During a bioprospection of bacteria with antimicrobial activity, the actinomycete strain A38 was isolated from a sediment sample of the Carpintero river located in the Gran Piedra Mountains, Santiago de Cuba province (Cuba). This strain was identified as a member of the genus by means of a polyphasic taxonomy study. Strain A38 was an aerobic Gram-positive filamentous bacterium that produced single spores in a well-developed vegetative mycelium. An aerial mycelium was absent. The cell wall contained -diaminopimelic acid and the whole-cell sugars were glucose, mannose, ribose and xylose. The major cellular fatty acids were isoC, 10 methyl C, anteiso-C and iso-C. The predominant menaquinones were MK-10(H) and MK-10(H6). Phylogenetic analysis of 16S rRNA gene sequences revealed that this strain was closely related to DSM 45142 (99.5 %), DSM 43903 (99.4 %), DSM 45555 (99.4 %), DSM 45782 (99.3 %), DSM 45794 (99.3 %), DSM 43813 (99.2 %) and DSM 45246 (99.2 %). The results of OrthoANIu analysis showed the highest similarity to DSM 43026 (96.4 %). However, the 16S rRNA and gene sequence-based phylogeny and phenotypic characteristics provided support to distinguish strain A38 as a novel species. On the basis of the results presented here, we propose to classify strain A38 (=LMG 30467=CECT 30034) as the type strain of the novel species sp. nov.
在对具有抗菌活性的细菌进行生物勘探时,从古巴圣地亚哥省格兰皮埃德拉山脉的卡皮斯特罗河的沉积物样本中分离出放线菌菌株 A38。通过多相分类学研究,该菌株被鉴定为属的一个成员。菌株 A38 是一种需氧革兰氏阳性丝状细菌,在发育良好的营养菌丝体中产生单个孢子。不存在气生菌丝体。细胞壁含有 -二氨基庚二酸,全细胞糖为葡萄糖、甘露糖、核糖和木糖。主要细胞脂肪酸为 isoC、10 甲基 C、anteiso-C 和 iso-C。主要的menaquinones 是 MK-10(H) 和 MK-10(H6)。16S rRNA 基因序列的系统发育分析表明,该菌株与 DSM 45142(99.5%)、DSM 43903(99.4%)、DSM 45555(99.4%)、DSM 45782(99.3%)、DSM 45794(99.3%)、DSM 43813(99.2%)和 DSM 45246(99.2%)密切相关。OrthoANIu 分析结果表明与 DSM 43026(96.4%)的相似度最高。然而,基于 16S rRNA 和基因序列的系统发育和表型特征支持将菌株 A38 鉴定为一个新种。基于这里提出的结果,我们建议将菌株 A38(=LMG 30467=CECT 30034)归类为新型种的模式菌株。