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新种氟司他汀小单孢菌,从海洋沉积物中分离得到。

Micromonospora fluostatini sp. nov., isolated from marine sediment.

作者信息

Phongsopitanun Wongsakorn, Kudo Takuji, Mori Mihoko, Shiomi Kazuro, Pittayakhajonwut Pattama, Suwanborirux Khanit, Tanasupawat Somboon

机构信息

Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand.

Japan Collection of Microorganisms, RIKEN BioResource Center, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan.

出版信息

Int J Syst Evol Microbiol. 2015 Dec;65(12):4417-4423. doi: 10.1099/ijsem.0.000589. Epub 2015 Sep 9.

Abstract

The novel actinomycete strain PWB-003T, which produced fluostatins B and C antibiotics, was isolated from nearshore sediment collected from Panwa Cape, Phuket Province, Thailand. Data from the present polyphasic study indicated that strain PWB-003T represented a member of the genus Micromonospora. It produced single spores on substrate mycelia and contained meso-diaminopimelic acid in the cell-wall peptidoglycan. Whole-cell hydrolysate contained ribose, xylose, arabinose, mannose and glucose. The predominant menaquinone was MK-10 (H4). Cellular fatty acids comprised C18 : 1ω9c, iso-C16 : 0, anteiso-C17 : 0, iso-C15 : 0 and iso-C17 : 0. On the basis of 16S rRNA gene sequence similarity analysis, the novel strain was closely related to Micromonospora eburnea LK2-10T (99.38 %), Micromonospora chaiyaphumensis MC5-1T (99.16 %), Micromonospora yangpuensis FXJ6.011T (98.97 %), Micromonospora echinaurantiaca DSM 43904T (98.97 %), Micromonospora pallida DSM 43817T (98.97 %), Micromonospora sagamiensis DSM 43912T and Micromonospora auratinigra JCM 12357T (both 98.97 %). The G+C content of the DNA was 74.5 mol%. DNA-DNA relatedness values among strain PWB-003T and related type strains ranged from 11.3 ± 1.3 to 38.8 ± 1.1 %. On the basis of these observations, strain PWB-003T could be distinguished from its closely related type strains and is considered to represent a novel species of the genus Micromonospora, for which the name Micromonospora fluostatini sp. nov. (type strain PWB-003T = JCM 30529T = PCU 341T = TISTR 2345T) is proposed.

摘要

新型放线菌菌株PWB-003T可产生氟他汀B和C抗生素,它是从泰国普吉府攀瓦角附近采集的近岸沉积物中分离得到的。本次多相研究的数据表明,菌株PWB-003T属于小单孢菌属。它在基质菌丝体上产生单个孢子,细胞壁肽聚糖中含有内消旋二氨基庚二酸。全细胞水解产物含有核糖、木糖、阿拉伯糖、甘露糖和葡萄糖。主要的甲基萘醌是MK-10(H4)。细胞脂肪酸包括C18 : 1ω9c、异-C16 : 0、anteiso-C17 : 0、异-C15 : 0和异-C17 : 0。基于16S rRNA基因序列相似性分析,该新菌株与象牙色小单孢菌LK2-10T(99.38 %)、猜也蓬小单孢菌MC5-1T(99.16 %)、杨浦小单孢菌FXJ6.011T(98.97 %)、橙黄小单孢菌DSM 43904T(98.97 %)、苍白小单孢菌DSM 43817T(98.97 %)、相模湾小单孢菌DSM 43912T以及黑黄小单孢菌JCM 12357T(均为98.97 %)密切相关。该菌株DNA的G+C含量为74.5 mol%。菌株PWB-003T与相关模式菌株之间的DNA-DNA杂交值在11.3 ± 1.3至38.8 ± 1.1 %之间。基于这些观察结果,菌株PWB-003T可与其密切相关的模式菌株区分开来,被认为代表小单孢菌属的一个新物种,为此提出名为氟他汀小单孢菌(Micromonospora fluostatini sp. nov.)(模式菌株PWB-003T = JCM 30529T = PCU 341T = TISTR 2345T)。

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