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2020 年 jMorp 更新:极大增强了日本普通人群的多组学数据资源。

jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population.

机构信息

Tohoku Medical Megabank Organization, Tohoku University, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi 980-8573, Japan.

Tohoku University Advanced Research Center for Innovations in Next-Generation Medicine, Tohoku University, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi 980-8573, Japan.

出版信息

Nucleic Acids Res. 2021 Jan 8;49(D1):D536-D544. doi: 10.1093/nar/gkaa1034.

Abstract

In the Tohoku Medical Megabank project, genome and omics analyses of participants in two cohort studies were performed. A part of the data is available at the Japanese Multi Omics Reference Panel (jMorp; https://jmorp.megabank.tohoku.ac.jp) as a web-based database, as reported in our previous manuscript published in Nucleic Acid Research in 2018. At that time, jMorp mainly consisted of metabolome data; however, now genome, methylome, and transcriptome data have been integrated in addition to the enhancement of the number of samples for the metabolome data. For genomic data, jMorp provides a Japanese reference sequence obtained using de novo assembly of sequences from three Japanese individuals and allele frequencies obtained using whole-genome sequencing of 8,380 Japanese individuals. In addition, the omics data include methylome and transcriptome data from ∼300 samples and distribution of concentrations of more than 755 metabolites obtained using high-throughput nuclear magnetic resonance and high-sensitivity mass spectrometry. In summary, jMorp now provides four different kinds of omics data (genome, methylome, transcriptome, and metabolome), with a user-friendly web interface. This will be a useful scientific data resource on the general population for the discovery of disease biomarkers and personalized disease prevention and early diagnosis.

摘要

在东北医科大学百万基因组计划中,对两个队列研究的参与者进行了基因组和组学分析。我们在 2018 年发表于《核酸研究》的一篇论文中曾报道过,该研究的一部分数据作为一个基于网络的数据库在日本多组学参考面板(jMorp;https://jmorp.megabank.tohoku.ac.jp)上可用。当时,jMorp 主要包含代谢组数据;但现在,除了代谢组数据样本数量的增加外,基因组、甲基化组和转录组数据也已被整合进来。对于基因组数据,jMorp 提供了使用来自三个日本人的序列从头组装获得的日本参考序列,以及使用 8380 个日本人的全基因组测序获得的等位基因频率。此外,这些组学数据包括来自约 300 个样本的甲基化组和转录组数据,以及使用高通量核磁共振和高灵敏度质谱法获得的超过 755 种代谢物浓度分布。总之,jMorp 现在提供了四种不同的组学数据(基因组、甲基化组、转录组和代谢组),具有用户友好的网络界面。这将是一个关于普通人群的有用的科学数据资源,可用于发现疾病生物标志物以及个性化疾病预防和早期诊断。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16d8/7779038/6cf3520a7ac6/gkaa1034fig1.jpg

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