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一种基于卷积神经网络的精确且稳健的尖峰分类方法。

An Accurate and Robust Method for Spike Sorting Based on Convolutional Neural Networks.

作者信息

Li Zhaohui, Wang Yongtian, Zhang Nan, Li Xiaoli

机构信息

School of Information Science and Engineering, Yanshan University, Qinhuangdao 066004, China.

Hebei Key Laboratory of Information Transmission and Signal Processing, Yanshan University, Qinhuangdao 066004, China.

出版信息

Brain Sci. 2020 Nov 11;10(11):835. doi: 10.3390/brainsci10110835.

Abstract

In the fields of neuroscience and biomedical signal processing, spike sorting is a crucial step to extract the information of single neurons from extracellular recordings. In this paper, we propose a novel deep learning approach based on one-dimensional convolutional neural networks (1D-CNNs) to implement accurate and robust spike sorting. The results of the simulated data demonstrated that the clustering accuracy in most datasets was greater than 99%, despite the multiple levels of noise and various degrees of overlapped spikes. Moreover, the proposed method performed significantly better than the state-of-the-art method named "WMsorting" and a deep-learning-based multilayer perceptron (MLP) model. In addition, the experimental data recorded from the primary visual cortex of a macaque monkey were used to evaluate the proposed method in a practical application. It was shown that the method could successfully isolate most spikes of different neurons (ranging from two to five) by training the 1D-CNN model with a small number of manually labeled spikes. Considering the above, the deep learning method proposed in this paper is of great advantage for spike sorting with high accuracy and strong robustness. It lays the foundation for application in more challenging works, such as distinguishing overlapped spikes and the simultaneous sorting of multichannel recordings.

摘要

在神经科学和生物医学信号处理领域,尖峰分类是从细胞外记录中提取单个神经元信息的关键步骤。在本文中,我们提出了一种基于一维卷积神经网络(1D-CNN)的新型深度学习方法,以实现准确且稳健的尖峰分类。模拟数据的结果表明,尽管存在多级噪声和不同程度的重叠尖峰,但在大多数数据集中,聚类准确率均高于99%。此外,所提出的方法比名为“WMsorting”的现有最先进方法和基于深度学习的多层感知器(MLP)模型表现得明显更好。另外,利用从猕猴初级视觉皮层记录的实验数据在实际应用中评估所提出的方法。结果表明,通过用少量手动标记的尖峰训练1D-CNN模型,该方法能够成功分离不同神经元(从两个到五个)的大多数尖峰。综上所述,本文提出的深度学习方法在高精度和强稳健性的尖峰分类方面具有很大优势。它为在更具挑战性的工作中的应用奠定了基础,例如区分重叠尖峰和多通道记录的同时分类。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/165d/7696441/485d4de26730/brainsci-10-00835-g001.jpg

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