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微生物代谢噪声。

Microbial metabolic noise.

机构信息

Department of Physics, University of Idaho, Moscow, Idaho, USA.

Department of Electrical and Computer Engineering, University of Delaware, Newark, Delaware, USA.

出版信息

WIREs Mech Dis. 2021 May;13(3):e1512. doi: 10.1002/wsbm.1512. Epub 2020 Nov 23.

DOI:10.1002/wsbm.1512
PMID:33225608
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8300576/
Abstract

From the time a cell was first placed under the microscope, it became apparent that identifying two clonal cells that "look" identical is extremely challenging. Since then, cell-to-cell differences in shape, size, and protein content have been carefully examined, informing us of the ultimate limits that hinder two cells from occupying an identical phenotypic state. Here, we present recent experimental and computational evidence that similar limits emerge also in cellular metabolism. These limits pertain to stochastic metabolic dynamics and, thus, cell-to-cell metabolic variability, including the resulting adapting benefits. We review these phenomena with a focus on microbial metabolism and conclude with a brief outlook on the potential relationship between metabolic noise and adaptive evolution. This article is categorized under: Metabolic Diseases > Computational Models Metabolic Diseases > Biomedical Engineering.

摘要

从首次将细胞置于显微镜下观察开始,人们就已经意识到,要识别两个“看起来”完全相同的克隆细胞是极其困难的。从那时起,人们就一直在仔细研究细胞间在形状、大小和蛋白质含量方面的差异,这些研究让我们了解到阻碍两个细胞处于相同表型状态的最终限制因素。在这里,我们提出了最近的实验和计算证据,表明细胞代谢中也存在类似的限制。这些限制与随机代谢动力学有关,因此也与细胞间代谢变异性有关,包括由此产生的适应优势。我们将重点关注微生物代谢来综述这些现象,并简要展望代谢噪声与适应性进化之间的潜在关系。本文属于以下分类:代谢疾病 > 计算模型代谢疾病 > 生物医学工程。

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本文引用的文献

1
Allocation of gene products to daughter cells is determined by the age of the mother in single cells.在单细胞中,子细胞中基因产物的分配由母细胞的年龄决定。
Proc Biol Sci. 2020 May 13;287(1926):20200569. doi: 10.1098/rspb.2020.0569. Epub 2020 May 6.
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Environmental drivers of metabolic heterogeneity in clonal microbial populations.微生物克隆群体代谢异质性的环境驱动因素。
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Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations.微生物对代谢毒素表型的异质性反应:在甲基杆菌属群体中甲醛耐受性的连续、动态变化分布。
PLoS Genet. 2019 Nov 11;15(11):e1008458. doi: 10.1371/journal.pgen.1008458. eCollection 2019 Nov.
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Phenotypic heterogeneity of microbial populations under nutrient limitation.营养限制下微生物种群的表型异质性。
Curr Opin Biotechnol. 2020 Apr;62:160-167. doi: 10.1016/j.copbio.2019.09.016. Epub 2019 Nov 5.
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Multiplexed and single cell tracing of lipid metabolism.脂质代谢的多重和单细胞示踪。
Nat Methods. 2019 Nov;16(11):1123-1130. doi: 10.1038/s41592-019-0593-6. Epub 2019 Oct 14.
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Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations.突发的微观梯度导致克隆细菌群体中的代谢交叉喂养和抗生素耐药性。
Philos Trans R Soc Lond B Biol Sci. 2019 Nov 25;374(1786):20190080. doi: 10.1098/rstb.2019.0080. Epub 2019 Oct 7.
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Mechanistic Origin of Cell-Size Control and Homeostasis in Bacteria.细菌中细胞大小控制和动态平衡的机制起源。
Curr Biol. 2019 Jun 3;29(11):1760-1770.e7. doi: 10.1016/j.cub.2019.04.062. Epub 2019 May 16.
8
Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting.活细胞成像揭示了转录因子、核小体和爆发之间的相互作用。
EMBO J. 2019 Jun 17;38(12). doi: 10.15252/embj.2018100809. Epub 2019 May 17.
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Stochastic modelling reveals mechanisms of metabolic heterogeneity.随机建模揭示代谢异质性的机制。
Commun Biol. 2019 Mar 21;2:108. doi: 10.1038/s42003-019-0347-0. eCollection 2019.
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Eliciting the impacts of cellular noise on metabolic trade-offs by quantitative mass imaging.通过定量质量成像技术探究细胞噪声对代谢权衡的影响。
Nat Commun. 2019 Feb 19;10(1):848. doi: 10.1038/s41467-019-08717-w.