Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York, USA.
Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York, USA.
PLoS Comput Biol. 2020 Nov 30;16(11):e1008435. doi: 10.1371/journal.pcbi.1008435. eCollection 2020 Nov.
We give an approximate solution to the difficult inverse problem of inferring the topology of an unknown network from given time-dependent signals at the nodes. For example, we measure signals from individual neurons in the brain, and infer how they are inter-connected. We use Maximum Caliber as an inference principle. The combinatorial challenge of high-dimensional data is handled using two different approximations to the pairwise couplings. We show two proofs of principle: in a nonlinear genetic toggle switch circuit, and in a toy neural network.
我们给出了一个从节点上给定的时变信号推断未知网络拓扑结构的困难逆问题的近似解。例如,我们测量大脑中单个神经元的信号,并推断它们是如何相互连接的。我们使用最大口径作为推断原理。使用两种不同的方法来处理高维数据的组合挑战。我们展示了两个原理证明:在非线性遗传开关电路和玩具神经网络中。