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多变量熵表征四种癌症类型中的基因表达和蛋白质-蛋白质网络。

Multivariate Entropy Characterizes the Gene Expression and Protein-Protein Networks in Four Types of Cancer.

作者信息

Juarez-Flores Angel, José Marco V

机构信息

Posgrado en Ciencias Biológicas, Unidad de Posgrado, Circuito de Posgrados, Ciudad Universitaria, Universidad Nacional Autónoma de México, CP 04510, Mexico City, Mexico.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, CP 04510, Mexico City, Mexico.

出版信息

Entropy (Basel). 2018 Feb 28;20(3):154. doi: 10.3390/e20030154.

Abstract

There is an important urgency to detect cancer at early stages to treat it, to improve the patients' lifespans, and even to cure it. In this work, we determined the entropic contributions of genes in cancer networks. We detected sudden changes in entropy values in melanoma, hepatocellular carcinoma, pancreatic cancer, and squamous lung cell carcinoma associated to transitions from healthy controls to cancer. We also identified the most relevant genes involved in carcinogenic process of the four types of cancer with the help of entropic changes in local networks. Their corresponding proteins could be used as potential targets for treatments and as biomarkers of cancer.

摘要

早期检测癌症以进行治疗、延长患者寿命甚至治愈癌症具有重要的紧迫性。在这项工作中,我们确定了癌症网络中基因的熵贡献。我们检测到黑色素瘤、肝细胞癌、胰腺癌和肺鳞状细胞癌中熵值的突然变化,这些变化与从健康对照向癌症的转变有关。我们还借助局部网络中的熵变化,确定了这四种癌症致癌过程中最相关的基因。它们相应的蛋白质可作为潜在的治疗靶点和癌症生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c807/7844632/150644aee3d7/entropy-20-00154-g0A1.jpg

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