• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

漆酶基因鉴定、分子对接及动力学模拟分析为漆酶与木质素结合提供了分子基础。

Genes Identification, Molecular Docking and Dynamics Simulation Analysis of Laccases from Provides Molecular Basis of Laccase Bound to Lignin.

机构信息

Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, China.

Sino-French Joint Laboratory for Invasive Forest Pests in Eurasia, Beijing Forestry University-French National Research Institute for Agriculture, Food and Environment (INRAE), Beijing 100083, China.

出版信息

Int J Mol Sci. 2020 Nov 22;21(22):8845. doi: 10.3390/ijms21228845.

DOI:10.3390/ijms21228845
PMID:33266512
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7700495/
Abstract

An obligate mutualistic relationship exists between the fungus and woodwasp . The fungus digests lignin in the host pine, providing essential nutrients for the growing woodwasp larvae. However, the functional properties of this symbiosis are poorly described. In this study, we identified, cloned, and characterized 14 laccase genes from . These genes encoded proteins of 508 to 529 amino acids and contained three typical copper-oxidase domains, necessary to confer laccase activity. Besides, we performed molecular docking and dynamics simulation of the laccase proteins in complex with lignin compounds (monomers, dimers, trimers, and tetramers). AaLac2, AaLac3, AaLac6, AaLac8, and AaLac10 were found that had low binding energies with all lignin model compounds tested and three of them could maintain stability when binding to these compounds. Among these complexes, amino acid residues ALA, GLN, LEU, PHE, PRO, and SER were commonly present. Our study reveals the molecular basis of laccases interacting with lignin, which is essential for understanding how the fungus provides nutrients to These findings might also provide guidance for the control of by informing the design of enzyme mutants that could reduce the efficiency of lignin degradation.

摘要

在真菌和蛀木蜂之间存在着一种强制性的互利共生关系。真菌在宿主松树上消化木质素,为生长中的蛀木蜂幼虫提供必要的营养。然而,这种共生关系的功能特性描述得很差。在这项研究中,我们从 中鉴定、克隆和表征了 14 个漆酶基因。这些基因编码 508 到 529 个氨基酸的蛋白质,含有三个典型的铜氧化酶结构域,这是赋予漆酶活性所必需的。此外,我们对漆酶蛋白与木质素化合物(单体、二聚体、三聚体和四聚体)复合物进行了分子对接和动力学模拟。发现 AaLac2、AaLac3、AaLac6、AaLac8 和 AaLac10 与所有测试的木质素模型化合物具有较低的结合能,其中三种在与这些化合物结合时能够保持稳定性。在这些复合物中,常见的氨基酸残基有 ALA、GLN、LEU、PHE、PRO 和 SER。我们的研究揭示了漆酶与木质素相互作用的分子基础,这对于理解真菌如何为 提供营养至关重要。这些发现也可能为通过设计能够降低木质素降解效率的酶突变体来控制 提供指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/464501c475ed/ijms-21-08845-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/8892deaaa465/ijms-21-08845-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/5eb5c6b1c406/ijms-21-08845-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/7f1ca9ee2266/ijms-21-08845-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/2b587cdc0e8a/ijms-21-08845-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/0c0e0c87a040/ijms-21-08845-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/2c369cd2be19/ijms-21-08845-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/464501c475ed/ijms-21-08845-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/8892deaaa465/ijms-21-08845-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/5eb5c6b1c406/ijms-21-08845-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/7f1ca9ee2266/ijms-21-08845-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/2b587cdc0e8a/ijms-21-08845-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/0c0e0c87a040/ijms-21-08845-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/2c369cd2be19/ijms-21-08845-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7403/7700495/464501c475ed/ijms-21-08845-g007.jpg

相似文献

1
Genes Identification, Molecular Docking and Dynamics Simulation Analysis of Laccases from Provides Molecular Basis of Laccase Bound to Lignin.漆酶基因鉴定、分子对接及动力学模拟分析为漆酶与木质素结合提供了分子基础。
Int J Mol Sci. 2020 Nov 22;21(22):8845. doi: 10.3390/ijms21228845.
2
Genome Sequencing and Analysis of the Fungal Symbiont of Sirex noctilio, Amylostereum areolatum: Revealing the Biology of Fungus-Insect Mutualism.鞘翅目夜蛾科钻蛀性害虫姬松梢小蠹及其共生真菌球腔菌的全基因组测序与分析:揭示了昆虫-真菌共生关系的生物学。
mSphere. 2020 May 13;5(3):e00301-20. doi: 10.1128/mSphere.00301-20.
3
Detection and Identification of the Invasive Sirex noctilio (Hymenoptera: Siricidae) Fungal Symbiont, Amylostereum areolatum (Russulales: Amylostereacea), in China and the Stimulating Effect of Insect Venom on Laccase Production by A. areolatum YQL03.中国入侵性松树蜂(膜翅目:树蜂科)真菌共生体——小孔淀粉韧革菌(红菇目:淀粉韧革菌科)的检测与鉴定以及昆虫毒液对小孔淀粉韧革菌YQL03漆酶产生的刺激作用
J Econ Entomol. 2015 Jun;108(3):1136-47. doi: 10.1093/jee/tov072. Epub 2015 Apr 22.
4
Comparative modeling and molecular docking analysis of white, brown and soft rot fungal laccases using lignin model compounds for understanding the structural and functional properties of laccases.使用木质素模型化合物对白色、棕色和软腐真菌漆酶进行比较建模和分子对接分析,以了解漆酶的结构和功能特性。
J Mol Graph Model. 2018 Jan;79:15-26. doi: 10.1016/j.jmgm.2017.10.019. Epub 2017 Nov 8.
5
Putative source of the invasive Sirex noctilio fungal symbiont, Amylostereum areolatum, in the eastern United States and its association with native siricid woodwasps.美国东部入侵性松树蜂真菌共生体小孔淀粉韧革菌的假定来源及其与本土树蜂科木蜂的关联
Mycol Res. 2009 Nov;113(Pt 11):1242-53. doi: 10.1016/j.mycres.2009.08.012. Epub 2009 Aug 27.
6
Molecular docking and dynamics simulation analyses unraveling the differential enzymatic catalysis by plant and fungal laccases with respect to lignin biosynthesis and degradation.分子对接和动力学模拟分析揭示了植物和真菌漆酶在木质素生物合成和降解方面的酶催化差异。
J Biomol Struct Dyn. 2015 Sep;33(9):1835-49. doi: 10.1080/07391102.2014.975282. Epub 2014 Nov 6.
7
Detection and identification of Amylostereum areolatum (Russulales: Amylostereaceae) in the mycangia of Sirex nigricornis (Hymenoptera: Siricidae) in central Louisiana.路易斯安那州中部黑角树蜂(膜翅目:树蜂科)菌囊内蜂窝状小孔淀粉韧革菌(红菇目:淀粉韧革菌科)的检测与鉴定
Environ Entomol. 2013 Dec;42(6):1246-56. doi: 10.1603/EN13103.
8
Lack of fidelity revealed in an insect-fungal mutualism after invasion.入侵后揭示的昆虫-真菌共生关系中的保真度缺失。
Biol Lett. 2013 Jun 5;9(4):20130342. doi: 10.1098/rsbl.2013.0342. Print 2013 Aug 23.
9
DNA sequence and RFLP data reflect geographical spread and relationships of Amylostereum areolatum and its insect vectors.DNA序列和限制性片段长度多态性数据反映了蜂窝状绵腹菌及其昆虫传播媒介的地理分布和关系。
Mol Ecol. 2002 Sep;11(9):1845-54. doi: 10.1046/j.1365-294x.2002.01572.x.
10
Fidelity among Sirex woodwasps and their fungal symbionts. sirex 木蜂及其真菌共生体之间的保真度。
Microb Ecol. 2013 Apr;65(3):753-62. doi: 10.1007/s00248-013-0218-z. Epub 2013 Mar 27.

引用本文的文献

1
Isolation of the Antifungal Compound Alliodorin from the Heartwood of A. DC. and the In Silico Analysis of the Laccase.从A. DC.的心材中分离抗真菌化合物蒜臭素及漆酶的计算机模拟分析
Plants (Basel). 2024 May 8;13(10):1294. doi: 10.3390/plants13101294.
2
Cromolyn prevents cerebral vasospasm and dementia by targeting WDR43.色甘酸钠通过作用于WDR43来预防脑血管痉挛和痴呆。
Front Aging Neurosci. 2023 Apr 13;15:1132733. doi: 10.3389/fnagi.2023.1132733. eCollection 2023.
3
Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes.

本文引用的文献

1
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data.TBtools:一个用于生物大数据交互式分析的集成工具包。
Mol Plant. 2020 Aug 3;13(8):1194-1202. doi: 10.1016/j.molp.2020.06.009. Epub 2020 Jun 23.
2
Genome Sequencing and Analysis of the Fungal Symbiont of Sirex noctilio, Amylostereum areolatum: Revealing the Biology of Fungus-Insect Mutualism.鞘翅目夜蛾科钻蛀性害虫姬松梢小蠹及其共生真菌球腔菌的全基因组测序与分析:揭示了昆虫-真菌共生关系的生物学。
mSphere. 2020 May 13;5(3):e00301-20. doi: 10.1128/mSphere.00301-20.
3
The subatomic resolution study of laccase inhibition by chloride and fluoride anions using single-crystal serial crystallography: insights into the enzymatic reaction mechanism.
近期金属酶氧化降解生物聚合物和塑料的理论见解。
Int J Mol Sci. 2023 Mar 28;24(7):6368. doi: 10.3390/ijms24076368.
4
Key Residues Affecting Binding Affinity of Fabricius Odorant-Binding Protein (SnocOBP9) to Aggregation Pheromone.影响 Fabricius 气味结合蛋白(SnocOBP9)与聚集信息素结合亲和力的关键残基。
Int J Mol Sci. 2022 Jul 30;23(15):8456. doi: 10.3390/ijms23158456.
使用单晶序列晶体学研究氯和氟阴离子对漆酶的亚原子分辨率抑制作用:对酶反应机制的深入了解。
Acta Crystallogr D Struct Biol. 2019 Sep 1;75(Pt 9):804-816. doi: 10.1107/S2059798319010684. Epub 2019 Aug 22.
4
Effects of endophytic fungi diversity in different coniferous species on the colonization of Sirex noctilio (Hymenoptera: Siricidae).不同针叶树种内生真菌多样性对星天牛(膜翅目:天牛科)定殖的影响。
Sci Rep. 2019 Mar 25;9(1):5077. doi: 10.1038/s41598-019-41419-3.
5
Study on transformation and degradation of bisphenol A by Trametes versicolor laccase and simulation of molecular docking.担子菌漆酶对双酚 A 的转化与降解研究及分子对接模拟。
Chemosphere. 2019 Jun;224:743-750. doi: 10.1016/j.chemosphere.2019.02.143. Epub 2019 Feb 23.
6
SignalP 5.0 improves signal peptide predictions using deep neural networks.SignalP 5.0 使用深度神经网络改进了信号肽预测。
Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18.
7
The Pfam protein families database in 2019.2019 年 Pfam 蛋白质家族数据库。
Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995.
8
Kinetic analysis and structural studies of a high-efficiency laccase from sp. RSD1.来自sp. RSD1的高效漆酶的动力学分析与结构研究。
FEBS Open Bio. 2018 Jul 3;8(8):1230-1246. doi: 10.1002/2211-5463.12459. eCollection 2018 Aug.
9
Structure-function study of two new middle-redox potential laccases from basidiomycetes Antrodiella faginea and Steccherinum murashkinskyi.担子菌 Antrodiella faginea 和 Steccherinum murashkinskyi 中两种新的中等氧化还原电位漆酶的结构-功能研究。
Int J Biol Macromol. 2018 Oct 15;118(Pt A):406-418. doi: 10.1016/j.ijbiomac.2018.06.038. Epub 2018 Jun 15.
10
Systematic Analysis of the Pleurotus ostreatus Laccase Gene (PoLac) Family and Functional Characterization of PoLac2 Involved in the Degradation of Cotton-Straw Lignin.糙皮侧耳漆酶基因家族的系统分析及参与棉秆木质素降解的 PoLac2 的功能特性研究。
Molecules. 2018 Apr 11;23(4):880. doi: 10.3390/molecules23040880.