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纤维素分解菌的特性和基因组功能分析:旨在为废物管理奠定基础。

Cellulolytic bacterium characterization and genome functional analysis: An attempt to lay the foundation for waste management.

机构信息

College of Bioscience and Biotechnology, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang 330045, PR China; Jiangxi Key Laboratory for Conservation and Utilization of Fungal Resources, Jiangxi Agricultural University, Nanchang 330045, PR China.

College of Resource and Environment, Northeast Agricultural University, Harbin 150030, PR China.

出版信息

Bioresour Technol. 2021 Feb;321:124462. doi: 10.1016/j.biortech.2020.124462. Epub 2020 Dec 1.

Abstract

Lignocellulosic waste has offered a cost-effective and food security-wise substrate for the generation of biofuels and value-added products. Here, whole-genome sequencing and comparative genomic analyses were performed for Serratia sp. AXJ-M. The results showed that strain AXJ-M contained a high proportion of strain-specific genes related to carbohydrate metabolism. Furthermore, the genetic basis of strain AXJ-M for efficient degradation of cellulose was identified. Cellulase activity tests revealed strong cellulose degradation ability and cellulase activities in strain AXJ-M. mRNA expression indicated that GH1, GH3 and GH8 might determine the strain's cellulose degradation ability. The SWISS-MODEL and Ramachandran Plot were used to predict and evaluate the 3D structure, respectively. High performance liquid chromatography (HPLC) and gas chromatography-mass spectrometer (GC-MS) were used to analyze the cellulose degradation products. Further research is needed to elucidate the cellulose degradation mechanism and to develop industrial applications for lignocellulosic biomass degradation and waste management.

摘要

木质纤维素废物为生物燃料和高附加值产品的生产提供了一种具有成本效益和食品安全意识的基质。在这里,对 Serratia sp. AXJ-M 进行了全基因组测序和比较基因组分析。结果表明,菌株 AXJ-M 含有大量与碳水化合物代谢相关的菌株特异性基因。此外,还确定了菌株 AXJ-M 高效降解纤维素的遗传基础。纤维素酶活性测试显示,菌株 AXJ-M 具有很强的纤维素降解能力和纤维素酶活性。mRNA 表达表明,GH1、GH3 和 GH8 可能决定了菌株的纤维素降解能力。SWISS-MODEL 和 Ramachandran Plot 分别用于预测和评估 3D 结构。高效液相色谱 (HPLC) 和气相色谱-质谱联用 (GC-MS) 用于分析纤维素降解产物。需要进一步研究以阐明纤维素的降解机制,并开发用于木质纤维素生物质降解和废物管理的工业应用。

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