Montreal Neurological Institute (MNI), McGill University, Montreal, Canada.
Montreal Neurological Institute (MNI), McGill University, Montreal, Canada; Wellcome Centre for Human Neuroimaging, University College London, London, UK.
Neuroimage. 2021 Feb 15;227:117622. doi: 10.1016/j.neuroimage.2020.117622. Epub 2020 Dec 8.
The MNI CIVET pipeline for automated extraction of cortical surfaces and evaluation of cortical thickness from in-vivo human MRI has been extended for processing macaque brains. Processing is performed based on the NIMH Macaque Template (NMT), as the reference template, with the anatomical parcellation of the surface following the D99 and CHARM atlases. The modifications needed to adapt CIVET to the macaque brain are detailed. Results have been obtained using CIVET-macaque to process the anatomical scans of the 31 macaques used to generate the NMT and another 95 macaques from the PRIME-DE initiative. It is anticipated that the open usage of CIVET-macaque will promote collaborative efforts in data collection and processing, sharing, and automated analyses from which the non-human primate brain imaging field will advance.
MNI CIVET 管道用于从体内人类 MRI 自动提取皮质表面并评估皮质厚度，现已扩展用于处理猕猴大脑。处理是基于 NIMH 猕猴模板 (NMT) 作为参考模板进行的，表面的解剖分割遵循 D99 和 CHARM 图谱。适应猕猴大脑所需的修改已详细说明。使用 CIVET-macaque 处理生成 NMT 的 31 只猕猴和 PRIME-DE 计划中的另外 95 只猕猴的解剖扫描，已获得结果。预计 CIVET-macaque 的开放使用将促进数据收集和处理、共享以及自动分析方面的合作努力，从而推动非人类灵长类脑成像领域的发展。
