从人类皮肤分离出的新型臂形甲基杆菌菌株的基因组序列草图
Draft Genome Sequence of a Novel Methylobacterium brachiatum Strain Isolated from Human Skin.
作者信息
Cremers Geert, Kenyon Angelique, Gubbels Niels, Jansen Matthijs, van Alen Theo A, Berben Tom, Op den Camp Huub J M
机构信息
Department of Microbiology, IWWR, Radboud University, Nijmegen, The Netherlands.
Department of Microbiology, IWWR, Radboud University, Nijmegen, The Netherlands
出版信息
Microbiol Resour Announc. 2020 Dec 10;9(50):e01093-20. doi: 10.1128/MRA.01093-20.
Abstract
MBRA is an aerobic alphaproteobacterium isolated from the human skin on methanol-containing minimal medium. The genome was sequenced using Illumina and Nanopore technology, and the genome was assembled using Unicycler. MBRA possesses two genes, one gene pair, and , and a complete serine pathway.
摘要
MBRA是一种需氧α-变形菌，从含甲醇的基本培养基上的人体皮肤中分离得到。使用Illumina和纳米孔技术对其基因组进行测序，并使用Unicycler对基因组进行组装。MBRA拥有两个基因、一个基因对以及完整的丝氨酸途径。
相似文献
1
Draft Genome Sequence of a Novel Methylobacterium brachiatum Strain Isolated from Human Skin.
Microbiol Resour Announc. 2020 Dec 10;9(50):e01093-20. doi: 10.1128/MRA.01093-20.
2
sp. nov., isolated from biological soil crusts.
Int J Syst Evol Microbiol. 2020 Mar;70(3):2089-2095. doi: 10.1099/ijsem.0.004020.
3
Overexpression of the methanol dehydrogenase gene mxaF in Methylobacterium sp. MB200 enhances L-serine production.
Lett Appl Microbiol. 2015 Oct;61(4):390-6. doi: 10.1111/lam.12467.
4
[Functionality of the xoxF Gene in Methylobacterium dichloromethanicum DM4].
Mikrobiologiia. 2015 Nov-Dec;84(6):697-704.
5
Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater.
Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1134-41. doi: 10.1099/ijs.0.65583-0.
6
Methylobacterium soli sp. nov. a methanol-utilizing bacterium isolated from the forest soil.
Antonie Van Leeuwenhoek. 2011 Mar;99(3):629-34. doi: 10.1007/s10482-010-9535-0. Epub 2011 Jan 9.
7
sp. nov., isolated from tungsten mine tailing.
Int J Syst Evol Microbiol. 2020 Apr;70(4):2867-2872. doi: 10.1099/ijsem.0.004112. Epub 2020 Mar 24.
8
Methylobacterium trifolii sp. nov. and Methylobacterium thuringiense sp. nov., methanol-utilizing, pink-pigmented bacteria isolated from leaf surfaces.
Int J Syst Evol Microbiol. 2013 Jul;63(Pt 7):2690-2699. doi: 10.1099/ijs.0.047787-0. Epub 2013 Jan 4.
9
XoxF-type methanol dehydrogenase from the anaerobic methanotroph “Candidatus Methylomirabilis oxyfera”.
Appl Environ Microbiol. 2015 Feb;81(4):1442-51. doi: 10.1128/AEM.03292-14.
10
Functional investigation of methanol dehydrogenase-like protein XoxF in Methylobacterium extorquens AM1.
Microbiology (Reading). 2010 Aug;156(Pt 8):2575-2586. doi: 10.1099/mic.0.038570-0. Epub 2010 May 6.
本文引用的文献
1
Lanmodulin: A Highly Selective Lanthanide-Binding Protein from a Lanthanide-Utilizing Bacterium.
J Am Chem Soc. 2018 Nov 7;140(44):15056-15061. doi: 10.1021/jacs.8b09842. Epub 2018 Oct 23.
2
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
3
Methylotrophic bacteria in sustainable agriculture.
World J Microbiol Biotechnol. 2016 Jul;32(7):120. doi: 10.1007/s11274-016-2074-8. Epub 2016 Jun 4.
4
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
5
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
6
Metabolic methanol: molecular pathways and physiological roles.
Physiol Rev. 2015 Apr;95(2):603-44. doi: 10.1152/physrev.00034.2014.
7
PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference.
Appl Microbiol Biotechnol. 2014;98(14):6163-83. doi: 10.1007/s00253-014-5766-8. Epub 2014 May 13.
8
Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
9
Microbial life in the phyllosphere.
Nat Rev Microbiol. 2012 Dec;10(12):828-40. doi: 10.1038/nrmicro2910.
10
Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater.
Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1134-41. doi: 10.1099/ijs.0.65583-0.
Zotero 插件