从进口零售虾中分离出的多重耐药性霍氏肠杆菌的全基因组序列分析
Whole-Genome Sequence Analysis of Multidrug-Resistant Enterobacter hormaechei Isolated from Imported Retail Shrimp.
作者信息
Indugu Nagaraju, Sharma Laxmi, Jackson Charlene R, Singh Prashant
机构信息
Department of Clinical Studies, Center for Animal Health and Productivity, School of Veterinary Medicine, University of Pennsylvania, Kennett Square, Pennsylvania, USA.
Department of Nutrition, Food and Exercise Sciences, Florida State University, Tallahassee, Florida, USA.
出版信息
Microbiol Resour Announc. 2020 Dec 10;9(50):e01103-20. doi: 10.1128/MRA.01103-20.
Abstract
Here, we announce the draft genome sequence of 2B-MC1, isolated from a shrimp sample collected from a farmer's market in Atlanta, Georgia. The assembled genome sequence observed was 4,661,561 bp long with a G+C content of 55.3%. The isolate harbored , , , , , , , , (A), , and antibiotic resistance genes.
摘要
在此，我们公布从佐治亚州亚特兰大一个农贸市场采集的虾样本中分离出的2B-MC1的基因组序列草图。观察到的组装基因组序列长度为4,661,561 bp，G+C含量为55.3%。该分离株携带了、、、、、、、、（A）、和抗生素抗性基因。
相似文献
1
Whole-Genome Sequence Analysis of Multidrug-Resistant Enterobacter hormaechei Isolated from Imported Retail Shrimp.从进口零售虾中分离出的多重耐药性霍氏肠杆菌的全基因组序列分析
Microbiol Resour Announc. 2020 Dec 10;9(50):e01103-20. doi: 10.1128/MRA.01103-20.
2
Carbapenem-Resistant ST1103 with IMP-26 Carbapenemase and ESBL Gene .携带IMP-26碳青霉烯酶和超广谱β-内酰胺酶基因的耐碳青霉烯类ST1103菌株
Infect Drug Resist. 2020 Feb 20;13:597-605. doi: 10.2147/IDR.S232514. eCollection 2020.
3
First Genomic Characterization of and Coharbouring Isolated from Food of Animal Origin.从动物源食品中分离出的[具体物质1]和共栖[具体物质2]的首次基因组特征分析
Pathogens. 2020 Aug 22;9(9):687. doi: 10.3390/pathogens9090687.
4
Emergence of a Multidrug-Resistant Clinical Isolate from Egypt Co-Harboring and .从埃及出现的一株同时携带……的多重耐药临床分离株。 （原文不完整，翻译可能存在一定局限性）
Microorganisms. 2020 Apr 20;8(4):595. doi: 10.3390/microorganisms8040595.
5
Genomic characterization of a large plasmid containing a bla gene carried on Salmonella enterica serovar Indiana C629 isolate from China.对来自中国的肠炎沙门氏菌印第安纳血清型C629分离株携带bla基因的大质粒进行基因组特征分析。
BMC Infect Dis. 2017 Jul 7;17(1):479. doi: 10.1186/s12879-017-2515-5.
6
Draft genome sequence of Escherichia coli M51-3: a multidrug-resistant strain assigned as ST131-H30 recovered from infant diarrheal infection in Mexico.大肠杆菌 M51-3 基因组草案序列：一株从墨西哥婴幼儿腹泻感染中分离的多重耐药菌株，被归为 ST131-H30。
J Glob Antimicrob Resist. 2019 Dec;19:311-312. doi: 10.1016/j.jgar.2019.10.030. Epub 2019 Nov 5.
7
Multidrug resistance and multivirulence plasmids in enterotoxigenic and hybrid Shiga toxin-producing/enterotoxigenic Escherichia coli isolated from diarrheic pigs in Switzerland.从瑞士腹泻猪中分离出的产肠毒素和杂交产志贺毒素/产肠毒素大肠杆菌中的多药耐药性和多毒力质粒
Vet J. 2019 Feb;244:60-68. doi: 10.1016/j.tvjl.2018.12.015. Epub 2018 Dec 12.
8
High contiguity genome sequence of a multidrug-resistant hospital isolate of .一株多重耐药医院分离株的高连续性基因组序列 。
你提供的原文不完整，请补充完整以便能准确翻译。
Gut Pathog. 2019 Feb 13;11:3. doi: 10.1186/s13099-019-0288-7. eCollection 2019.
9
Genome Sequence of Carbapenemase-Producing Enterobacter cloacae 0102-4P-1 Harboring the IncC-Type Plasmid with a Multidrug Resistance Site Encoding , Isolated from Commercially Imported Shrimp.从商业进口虾中分离出的携带编码多重耐药位点的IncC型质粒的产碳青霉烯酶阴沟肠杆菌0102 - 4P - 1的基因组序列
Microbiol Resour Announc. 2022 May 19;11(5):e0105821. doi: 10.1128/mra.01058-21. Epub 2022 Apr 20.
10
Draft Genome Assemblies of Clinical Isolates of Klebsiella pneumoniae V9011662 and Enterobacter hormaechei Entb306.肺炎克雷伯菌V9011662临床分离株和霍氏肠杆菌Entb306的基因组草图组装
Microbiol Resour Announc. 2019 Apr 11;8(15):e00091-19. doi: 10.1128/MRA.00091-19.
引用本文的文献
1
Rewiring Escherichia coli to transform formate into methyl groups.对大肠杆菌进行重新编程，使其将甲酸转化为甲基。
Microb Cell Fact. 2025 Mar 7;24(1):55. doi: 10.1186/s12934-025-02674-4.
2
Genome Sequencing Reveals the Potential of sp. Strain UNJFSC003 for Hydrocarbon Bioremediation.基因组测序揭示了sp. 菌株UNJFSC003在烃类生物修复方面的潜力。
Genes (Basel). 2025 Jan 16;16(1):89. doi: 10.3390/genes16010089.
3
Antimicrobial resistance determinants in silage.青贮中抗微生物药物耐药性决定因子。
Sci Rep. 2022 Mar 28;12(1):5243. doi: 10.1038/s41598-022-09296-5.
4
Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 14: suitability of taxonomic units notified to EFSA until March 2021.截至2021年3月向欧洲食品安全局（EFSA）通报的有意添加到食品或饲料中的QPS推荐生物制剂清单更新：向EFSA通报的分类单元的适用性
EFSA J. 2021 Jul 7;19(7):e06689. doi: 10.2903/j.efsa.2021.6689. eCollection 2021 Jul.
5
Antibiotic-resistant bacteria and gut microbiome communities associated with wild-caught shrimp from the United States versus imported farm-raised retail shrimp.与美国野生捕捞虾和进口养殖零售虾相关的抗生素耐药菌和肠道微生物群落。
Sci Rep. 2021 Feb 8;11(1):3356. doi: 10.1038/s41598-021-82823-y.
本文引用的文献
1
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.通过在分离株集合中使用抗生素耐药基因型-表型相关性来验证 AMRFinder 工具和耐药基因数据库。
Antimicrob Agents Chemother. 2019 Oct 22;63(11). doi: 10.1128/AAC.00483-19. Print 2019 Nov.
2
PLSDB: a resource of complete bacterial plasmids.PLSDB：一个完整的细菌质粒资源库。
Nucleic Acids Res. 2019 Jan 8;47(D1):D195-D202. doi: 10.1093/nar/gky1050.
3
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.微生物基因组图谱 (MiGA) 服务器：基于全基因组水平的古菌和细菌的分类和基因多样性分析。
Nucleic Acids Res. 2018 Jul 2;46(W1):W282-W288. doi: 10.1093/nar/gky467.
4
Prevalence and Transmission of Antimicrobial Resistance in a Vertically Integrated Veal Calf Production System.垂直整合小牛肉犊牛生产系统中抗菌药物耐药性的流行和传播。
Foodborne Pathog Dis. 2017 Dec;14(12):711-718. doi: 10.1089/fpd.2017.2310. Epub 2017 Sep 15.
5
Mash: fast genome and metagenome distance estimation using MinHash.Mash：使用MinHash进行快速的基因组和宏基因组距离估计。
Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x.
6
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
7
Bacterial community dynamics in a swine wastewater anaerobic reactor revealed by 16S rDNA sequence analysis.基于16S rDNA序列分析揭示的猪废水厌氧反应器中的细菌群落动态
J Biotechnol. 2015 Jan 20;194:124-31. doi: 10.1016/j.jbiotec.2014.11.026. Epub 2014 Dec 11.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
10
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
Zotero 插件