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从一名健康日本女性粪便中分离出的JCM 34082的全基因组序列

Complete Genome Sequence of JCM 34082, Isolated from Feces from a Healthy Japanese Female.

作者信息

Sakamoto Mitsuo, Ikeyama Nao, Toyoda Atsushi, Murakami Takumi, Mori Hiroshi, Ohkuma Moriya

机构信息

Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Research Center, Tsukuba, Ibaraki, Japan

PRIME, Japan Agency for Medical Research and Development, Tsukuba, Ibaraki, Japan.

出版信息

Microbiol Resour Announc. 2020 Dec 10;9(50):e01160-20. doi: 10.1128/MRA.01160-20.

DOI:10.1128/MRA.01160-20
PMID:33303667
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7729415/
Abstract

Here, we report the complete genome sequence of JCM 34082, a member of the family that was isolated from feces from a healthy Japanese woman. The genome assembly comprised 2,869,982 bp, with a G+C content of 29.8%.

摘要

在此,我们报告了JCM 34082的全基因组序列,它是从一名健康日本女性粪便中分离出的该菌科的一个成员。基因组组装包含2,869,982个碱基对,G+C含量为29.8%。

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本文引用的文献

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Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces.肠道粪杆菌属,新属,新种及粪粪杆菌新种,从人类粪便中分离得到。
Int J Syst Evol Microbiol. 2019 Jul;69(7):2120-2128. doi: 10.1099/ijsem.0.003443. Epub 2019 May 17.
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Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov.
肛双歧杆菌属 Faecalimonas 属,新属,新种,从人类粪便中分离得到,以及将 Eubacterium contortum、Eubacterium fissicatena 和 Clostridium oroticum 重新分类为 Faecalicatena contorta 属,新组合,Faecalicatena fissicatena 组合和 Faecalicatena orotica 组合。
Int J Syst Evol Microbiol. 2017 May;67(5):1219-1227. doi: 10.1099/ijsem.0.001790. Epub 2017 May 30.
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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu:通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
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PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
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Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格:原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.