Department of Environmental Sciences, University of South Africa (UNISA), Johannesburg, South Africa.
School of Food and Agricultural Sciences, Jaramogi Oginga Odinga University of Science and Technology, Bondo, Kenya.
Microbiologyopen. 2021 Jan;10(1):e1118. doi: 10.1002/mbo3.1118. Epub 2020 Dec 12.
Municipal landfills are hot spots of dynamic bioprocesses facilitated by complex interactions of a multifaceted microbiome, whose functioning in municipal landfills at different maturing stages is poorly understood. This study determined bacterial community composition, interaction conetworks, metabolic functions, and controlling physicochemical properties in two landfills aged 14 and 36 years. High throughput sequencing revealed a similar distribution of bacterial diversity, evenness, and richness in the 14- and 36-year-old landfills in the 0-90 cm depth. At deeper layers (120-150 cm), the 14-year-old landfill had significantly greater bacterial diversity and richness indicating that it is a more active microcosm than the 36-year-old landfill, where phylum Epsilonbacteraeota was overwhelmingly dominant. The taxonomic and functional diversity in the 14-year-old landfill was further reflected by the abundant presence of indicator genera Pseudomonas,Lutispora,Hydrogenspora, and Sulfurimonas coupled with the presence of biomarker enzymes associated with carbon (C), nitrogen (N), and sulfur (S) metabolism. Furthermore, canonical correspondence analysis revealed that bacteria in the 14-year-old landfill were positively correlated with high C, N, S, and phosphorus resulting in positive cooccurrence interactions. In the 36-year-old landfill, negative coexclusion interactions populated by members of N fixing Rhizobiales were dominant, with metabolic functions and biomarker enzymes predicting significant N fixation that, as indicated by interaction network, potentially inhibited ammonia-intolerant bacteria. Overall, our findings show that diverse bacterial community in the 14-year-old landfill was dominated by copiotrophs associated with positive conetworks, whereas the 36-year-old landfill was dominated by lithotrophs linked to coexclusion interactions that greatly reduced bacterial diversity and richness.
垃圾填埋场是动态生物过程的热点,这些过程是由复杂的多方面微生物组相互作用促进的,而不同成熟阶段的城市垃圾填埋场中微生物组的功能仍知之甚少。本研究测定了两个分别为 14 年和 36 年历史的垃圾填埋场中细菌群落组成、相互作用网络、代谢功能以及控制物理化学性质。高通量测序显示,在 0-90cm 深度,14 年和 36 年的垃圾填埋场中细菌多样性、均匀度和丰富度的分布相似。在更深的层(120-150cm),14 年的垃圾填埋场的细菌多样性和丰富度显著更高,这表明它比 36 年的垃圾填埋场更为活跃,后者中变形菌门(Epsilonbacteraeota)占据绝对优势。在 14 年的垃圾填埋场中,假单胞菌(Pseudomonas)、卢氏菌(Lutispora)、氢化硫单胞菌(Hydrogenspora)和硫单胞菌(Sulfurimonas)等指示菌属的大量存在以及与碳(C)、氮(N)和硫(S)代谢相关的生物标志物酶的存在,进一步反映了其在分类和功能上的多样性。此外,典范对应分析显示,14 年的垃圾填埋场中的细菌与高 C、N、S 和磷呈正相关,导致正共发生相互作用。在 36 年的垃圾填埋场中,固氮根瘤菌(Rhizobiales)成员占主导地位的负排除相互作用占主导地位,代谢功能和生物标志物酶预测了显著的固氮作用,如相互作用网络所示,这可能抑制了不耐氨的细菌。总的来说,我们的研究结果表明,14 年的垃圾填埋场中多样的细菌群落主要由与正相互作用相关的好养细菌组成,而 36 年的垃圾填埋场主要由与负排除相互作用相关的自养细菌组成,这些相互作用极大地降低了细菌的多样性和丰富度。