National Institute for Chemical-Pharmaceutical Research and Development, 112 Vitan Av., 031299 Bucharest, Romania.
Molecules. 2020 Dec 10;25(24):5828. doi: 10.3390/molecules25245828.
Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans' theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski's and Weber's rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection.
通过计算机模拟方法研究了苯甲酸和半合成烷基没食子酸的几种衍生物,以评估它们对 SARS-CoV-2 主要蛋白酶的潜在抗病毒活性。分子对接研究用于预测它们与 SARS-CoV-2 主要蛋白酶活性结合位点的氨基酸残基的结合亲和力和相互作用,与 boceprevir 进行比较。根据密度泛函理论(DFT)计算结果,按照 Koopmans 定理,报道了深入的结构见解和量子化学反应性分析。此外,还根据 Lipinski 和 Weber 规则提供了候选药物的药物相似性评估。通过主成分分析(PCA)的统计方法对对接和关键分子描述符和性质的结果进行了正向分析,以确定它们相关性的程度。获得的结果表明,有两个有前途的候选药物可用于未来的药物开发,以对抗冠状病毒感染。