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中国东南部不同温度下狗牙根沿纬度梯度的多样性模式

Diversity Patterns of Bermuda Grass along Latitudinal Gradients at Different Temperatures in Southeastern China.

作者信息

Zhang Jing-Xue, Chen Ming-Hui, Gan Lu, Zhang Chuan-Jie, Shen Yu, Qian Jin, Han Meng-Li, Guo Yu-Xia, Yan Xue-Bing

机构信息

College of Animal Science and Technology, Yangzhou University, Yangzhou 225000, China.

College of Animal and Veterinary Science, Henan Agricultural University, Zhengzhou 450002, China.

出版信息

Plants (Basel). 2020 Dec 15;9(12):1778. doi: 10.3390/plants9121778.

Abstract

(L.) Pers. (common Bermuda grass) has a limited capacity to grow at low temperatures, which limits its geographical range. Exploring its evolutionary relationship across different environmental gradients is necessary to understand the effects of temperature change on the genetics of common Bermuda grass. In this study, high-throughput transcriptome sequencing was performed on 137 samples of from 16 latitudinal gradients to explore the differential molecular markers and analyze genetic diversity and structure along latitudinal gradients at different temperatures. We primarily sampled more high-quality single nucleotide polymorphisms (SNPs) from populations at lower and middle latitudes. Greater intraspecific genetic variation at each level of temperature treatment could be due to factors such as wind pollination and asexual breeding. Populations of at high latitudes differed from populations at middle and low latitudes, which was supported by a principal component analysis (PCA) and genetic structure analysis, performed at different temperatures. We observed more genetic variation for low-latitude populations at 5 °C, according to an analysis of three phylogenetic trees at different temperature levels, suggesting that low temperatures affected samples with low cold resistance. Based on the results of phylogenetic analysis, we found that samples from high latitudes evolved earlier than most samples at low latitudes. The results provide a comprehensive understanding of the evolutionary phenomenon of landscape genetics, laying the groundwork for future structural and comparative genomic studies of .

摘要

狗牙根(L.)Pers.(普通百慕大草)在低温下生长能力有限,这限制了其地理分布范围。探索其在不同环境梯度下的进化关系对于理解温度变化对普通百慕大草遗传的影响至关重要。在本研究中,对来自16个纬度梯度的137个狗牙根样本进行了高通量转录组测序,以探索差异分子标记,并分析不同温度下沿纬度梯度的遗传多样性和结构。我们主要从低纬度和中纬度种群中采样了更多高质量的单核苷酸多态性(SNP)。在每个温度处理水平上更大的种内遗传变异可能是由于风媒授粉和无性繁殖等因素。在不同温度下进行的主成分分析(PCA)和遗传结构分析支持了高纬度狗牙根种群与中低纬度种群的差异。根据对不同温度水平下的三棵系统发育树的分析,我们观察到在5°C时低纬度种群有更多的遗传变异,这表明低温影响了抗寒性低的样本。基于系统发育分析结果,我们发现高纬度样本比大多数低纬度样本进化得更早。这些结果为全面理解景观遗传学的进化现象提供了依据,为未来狗牙根的结构和比较基因组研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9b4/7765174/76acfa6f0d85/plants-09-01778-g001.jpg

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