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为药物警戒智能自动化开发众包训练数据集。

Developing Crowdsourced Training Data Sets for Pharmacovigilance Intelligent Automation.

作者信息

Gartland Alex, Bate Andrew, Painter Jeffery L, Casperson Tim A, Powell Gregory Eugene

机构信息

College of Medicine, University of Central Florida, Orlando, FL, USA.

Safety and Medical Governance, GlaxoSmithKline, London, UK.

出版信息

Drug Saf. 2021 Mar;44(3):373-382. doi: 10.1007/s40264-020-01028-w. Epub 2020 Dec 22.

DOI:10.1007/s40264-020-01028-w
PMID:33354751
Abstract

INTRODUCTION

Machine learning offers an alluring solution to developing automated approaches to the increasing individual case safety report burden being placed upon pharmacovigilance. Leveraging crowdsourcing to annotate unstructured data may provide accurate, efficient, and contemporaneous training data sets in support of machine learning.

OBJECTIVE

The objective of this study was to evaluate whether crowdsourcing can be used to accurately and efficiently develop training data sets in support of pharmacovigilance automation.

MATERIALS AND METHODS

Pharmacovigilance experts created a reference dataset by reviewing 15,490 de-identified social media posts of narratives pertaining to 15 drugs and 22 medically relevant topics. A random sampling of posts from the reference dataset was published on Amazon Turk and its users (Turkers) were asked a series of questions about those same medical concepts. Accuracy, price elasticity, and time efficiency were evaluated.

RESULTS

Accuracy of crowdsourced curation exceeded 90% when compared to the reference dataset and was completed in about 5% of the time. There was an increase in time efficiency with higher pay, but there was no significant difference in accuracy. Additionally, having a social media post reviewed by more than one Turker (using a voting system) did not offer significant improvements in terms of accuracy.

CONCLUSIONS

Crowdsourcing is an accurate and efficient method that can be used to develop training data sets in support of pharmacovigilance automation. More research is needed to better understand the breadth and depth of possible uses as well as strengths, limitations, and generalizability of results.

摘要

引言

机器学习为开发自动化方法以应对药物警戒中日益增加的个体病例安全报告负担提供了一个诱人的解决方案。利用众包来注释非结构化数据可以提供准确、高效和及时的训练数据集,以支持机器学习。

目的

本研究的目的是评估众包是否可用于准确、高效地开发训练数据集以支持药物警戒自动化。

材料与方法

药物警戒专家通过审查15490条与15种药物和22个医学相关主题有关的去识别化社交媒体帖子,创建了一个参考数据集。从参考数据集中随机抽取的帖子发布在亚马逊土耳其机器人平台上,并询问其用户(土耳其机器人用户)一系列关于相同医学概念的问题。评估了准确性、价格弹性和时间效率。

结果

与参考数据集相比,众包管理的准确性超过90%,且完成时间约为原来的5%。报酬越高,时间效率越高,但准确性没有显著差异。此外,让多个土耳其机器人用户(使用投票系统)审查一条社交媒体帖子,在准确性方面并没有显著提高。

结论

众包是一种准确、高效的方法,可用于开发训练数据集以支持药物警戒自动化。需要更多的研究来更好地理解可能用途的广度和深度,以及结果的优势、局限性和普遍性。

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本文引用的文献

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Recommendations for the Use of Social Media in Pharmacovigilance: Lessons from IMI WEB-RADR.药物警戒中社交媒体使用的建议:来自 IMI WEB-RADR 的经验教训。
Drug Saf. 2019 Dec;42(12):1393-1407. doi: 10.1007/s40264-019-00858-7.
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Recommendations on the Use of Mobile Applications for the Collection and Communication of Pharmaceutical Product Safety Information: Lessons from IMI WEB-RADR.移动应用程序在药品安全信息收集和交流方面的使用建议:来自 IMI WEB-RADR 的经验教训。
Drug Saf. 2019 Apr;42(4):477-489. doi: 10.1007/s40264-019-00813-6.
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Evaluation of Facebook and Twitter Monitoring to Detect Safety Signals for Medical Products: An Analysis of Recent FDA Safety Alerts.
让患者参与在线医疗论坛:三个药物警戒用例。
Front Pharmacol. 2022 Jun 3;13:901355. doi: 10.3389/fphar.2022.901355. eCollection 2022.
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Leveraging Machine Learning to Facilitate Individual Case Causality Assessment of Adverse Drug Reactions.利用机器学习促进药物不良反应个体病例因果关系评估。
Drug Saf. 2022 May;45(5):571-582. doi: 10.1007/s40264-022-01163-6. Epub 2022 May 17.
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Industry Perspective on Artificial Intelligence/Machine Learning in Pharmacovigilance.药物警戒人工智能/机器学习的行业视角。
Drug Saf. 2022 May;45(5):439-448. doi: 10.1007/s40264-022-01164-5. Epub 2022 May 17.
评估脸书和推特监测以检测医疗产品安全信号:对美国食品药品监督管理局近期安全警报的分析
Drug Saf. 2017 Apr;40(4):317-331. doi: 10.1007/s40264-016-0491-0.