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泥炭开采后,甲烷营养活性的恢复并未反映在甲烷驱动的相互作用网络上。

Recovery in methanotrophic activity does not reflect on the methane-driven interaction network after peat mining.

作者信息

Kaupper Thomas, Mendes Lucas W, Harnisz Monica, Krause Sascha M B, Horn Marcus A, Ho Adrian

机构信息

Institute of Microbiology, Leibniz Universität Hannover, Herrenhäuser Str. 2, 30419 Hannover, Germany.

Center for Nuclear Energy in Agriculture, University of São Paulo-USP, Brazil.

出版信息

Appl Environ Microbiol. 2021 Mar 1;87(5). doi: 10.1128/AEM.02355-20. Epub 2020 Dec 18.

Abstract

Aerobic methanotrophs are crucial in ombrotrophic peatlands, driving the methane and nitrogen cycles. Peat mining adversely affects the methanotrophs, but activity and community composition/abundances may recover after restoration. Considering that the methanotrophic activity and growth are significantly stimulated in the presence of other microorganisms, the methane-driven interaction network, encompassing methanotrophs and non-methanotrophs (i.e., methanotrophic interactome), may also be relevant in conferring community resilience. Yet, little is known of the response and recovery of the methanotrophic interactome to disturbances. Here, we determined the recovery of the methanotrophic interactome as inferred by a co-occurrence network analysis, comparing a pristine and restored peatland. We coupled a DNA-based stable isotope probing (SIP) approach using C-CH to a co-occurrence network analysis derived from the C-enriched 16S rRNA gene sequences to relate the response in methanotrophic activity to the structuring of the interaction network. Methanotrophic activity and abundances recovered after peat restoration since 2000. '' was the predominantly active methanotrophs in both peatlands, but differed in the relative abundance of and However, bacterial community composition was distinct in both peatlands. Likewise, the methanotrophic interactome was profoundly altered in the restored peatland. Structuring of the interaction network after peat mining resulted in the loss of complexity and modularity, indicating a less connected and efficient network, which may have consequences in the event of recurring/future disturbances. Therefore, determining the response of the methane-driven interaction network, in addition to relating methanotrophic activity to community composition/abundances, provided a more comprehensive understanding of the resilience of the methanotrophs. The resilience and recovery of microorganisms from disturbances are often determined with regard to their activity and community composition/abundances. Rarely has the response of the network of interacting microorganisms been considered, despite accumulating evidence showing that microbial interaction modulates community functioning. Comparing the methane-driven interaction network of a pristine and restored peatland, our findings revealed that the metabolically active microorganisms were less connected and formed less modular 'hubs' in the restored peatland, indicative of a less complex network which may have consequences with recurring disturbances and environmental changes. This also suggests that the resilience and full recovery in the methanotrophic activity and abundances do not reflect on the interaction network. Therefore, it is relevant to consider the interaction-induced response, in addition to documenting changes in activity and community composition/abundances, to provide a comprehensive understanding of the resilience of microorganisms to disturbances.

摘要

需氧甲烷氧化菌在雨养泥炭地中至关重要,驱动着甲烷和氮循环。泥炭开采对甲烷氧化菌产生不利影响,但恢复后其活性以及群落组成/丰度可能会恢复。鉴于在其他微生物存在的情况下甲烷氧化活性和生长会受到显著刺激,包含甲烷氧化菌和非甲烷氧化菌的甲烷驱动相互作用网络(即甲烷氧化相互作用组)在赋予群落恢复力方面可能也具有重要意义。然而,对于甲烷氧化相互作用组对干扰的响应和恢复情况却知之甚少。在此,我们通过共现网络分析推断甲烷氧化相互作用组的恢复情况,对一个原始泥炭地和一个恢复后的泥炭地进行了比较。我们将基于DNA的稳定同位素探测(SIP)方法(使用¹³C-CH₄)与从¹³C富集的16S rRNA基因序列推导的共现网络分析相结合,以将甲烷氧化活性的响应与相互作用网络的结构联系起来。自2000年泥炭恢复后,甲烷氧化活性和丰度有所恢复。“Methylocella”是两个泥炭地中主要的活跃甲烷氧化菌,但在“Methylocella silvestris”和“Methylocella palustris”的相对丰度上存在差异。然而,两个泥炭地的细菌群落组成截然不同。同样,恢复后的泥炭地中甲烷氧化相互作用组也发生了深刻变化。泥炭开采后相互作用网络的结构导致复杂性和模块性丧失,表明网络连接性降低且效率低下,这在干扰反复出现/未来发生干扰时可能会产生影响。因此,除了将甲烷氧化活性与群落组成/丰度联系起来之外,确定甲烷驱动相互作用网络的响应,能更全面地了解甲烷氧化菌的恢复力。微生物从干扰中恢复的恢复力和恢复情况通常根据其活性以及群落组成/丰度来确定。尽管越来越多的证据表明微生物相互作用会调节群落功能,但很少有人考虑相互作用微生物网络的响应。通过比较原始泥炭地和恢复后泥炭地的甲烷驱动相互作用网络,我们的研究结果表明,在恢复后的泥炭地中,代谢活跃的微生物连接性较低,形成的模块性“枢纽”较少,这表明网络不太复杂,可能会对干扰反复出现和环境变化产生影响。这也表明甲烷氧化活性和丰度的恢复力和完全恢复并不能反映相互作用网络的情况。因此,除了记录活性和群落组成/丰度变化之外,考虑相互作用诱导的响应对于全面了解微生物对干扰的恢复力具有重要意义。

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