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鬼林枯立木中的微生物群落主要为需氧、腐生和产甲烷微生物。

Microbial Communities in Standing Dead Trees in Ghost Forests are Largely Aerobic, Saprophytic, and Methanotrophic.

机构信息

Departments of Biology and Environmental Studies, Hollins University, Roanoke, VA, 24020, USA.

U.S. Geological Survey, Eastern Ecological Science Center, Laurel, MD, 20708, USA.

出版信息

Curr Microbiol. 2024 Jun 19;81(8):229. doi: 10.1007/s00284-024-03767-w.

DOI:10.1007/s00284-024-03767-w
PMID:38896154
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11186919/
Abstract

Standing dead trees (snags) are recognized for their influence on methane (CH) cycling in coastal wetlands, yet the biogeochemical processes that control the magnitude and direction of fluxes across the snag-atmosphere interface are not fully elucidated. Herein, we analyzed microbial communities and fluxes at one height from ten snags in a ghost forest wetland. Snag-atmosphere CH fluxes were highly variable (- 0.11-0.51 mg CH m h). CH production was measured in three out of ten snags; whereas, CH consumption was measured in two out of ten snags. Potential CH production and oxidation in one core from each snag was assayed in vitro. A single core produced CH under anoxic and oxic conditions, at measured rates of 0.7 and 0.6 ng CH g h, respectively. Four cores oxidized CH under oxic conditions, with an average rate of - 1.13 ± 0.31 ng CH g h. Illumina sequencing of the V3/V4 region of the 16S rRNA gene sequence revealed diverse microbial communities and indicated oxidative decomposition of deadwood. Methanogens were present in 20% of the snags, with a mean relative abundance of < 0.0001%. Methanotrophs were identified in all snags, with a mean relative abundance of 2% and represented the sole CH-cycling communities in 80% of the snags. These data indicate potential for microbial attenuation of CH emissions across the snag-atmosphere interface in ghost forests. A better understanding of the environmental drivers of snag-associated microbial communities is necessary to forecast the response of CH cycling in coastal ghost forest wetlands to a shifting coastal landscape.

摘要

立木(枯立木)因其对沿海湿地甲烷(CH)循环的影响而受到重视,但控制穿过枯木-大气界面通量大小和方向的生物地球化学过程尚未完全阐明。在此,我们分析了幽灵林湿地 10 个枯木中一个高度的微生物群落和通量。枯木-大气 CH 通量变化很大(-0.11-0.51 mg CH m h)。在 10 个枯木中有 3 个测量到 CH 产生,而在 10 个枯木中有 2 个测量到 CH 消耗。在每个枯木的一个核心中测定了 CH 的潜在产生和氧化。一个核心在缺氧和有氧条件下都产生 CH,测量速率分别为 0.7 和 0.6 ng CH g h。四个核心在有氧条件下氧化 CH,平均速率为-1.13±0.31 ng CH g h。16S rRNA 基因序列 V3/V4 区的 Illumina 测序揭示了多样化的微生物群落,并表明枯木的氧化分解。20%的枯木中存在产甲烷菌,平均相对丰度<0.0001%。所有枯木中均鉴定出甲烷氧化菌,平均相对丰度为 2%,并在 80%的枯木中代表了唯一的 CH 循环群落。这些数据表明,在幽灵林,微生物可能会减弱枯木-大气界面的 CH 排放。需要更好地了解与枯木相关的微生物群落的环境驱动因素,以便预测沿海幽灵林湿地 CH 循环对沿海景观变化的响应。

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本文引用的文献

1
Plant-mediated CH exchange in wetlands: A review of mechanisms and measurement methods with implications for modelling.湿地植物介导的 CH 交换:机制与测量方法综述及其对模型化的影响。
Sci Total Environ. 2024 Mar 1;914:169662. doi: 10.1016/j.scitotenv.2023.169662. Epub 2023 Dec 28.
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Borgs are giant genetic elements with potential to expand metabolic capacity.博尔盖斯是具有潜在扩大代谢能力的大型遗传元件。
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Sulfur and methane oxidation by a single microorganism.
一种微生物对硫和甲烷的氧化作用。
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sp. nov., with ginsenoside-converting activity isolated from activated sludge.新型菌株,从活性污泥中分离得到具有人参皂苷转化活性的菌株。
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Cross-kingdom interactions and functional patterns of active microbiota matter in governing deadwood decay.跨界相互作用和活性微生物群在控制枯木腐烂中的功能模式。
Proc Biol Sci. 2022 May 11;289(1974):20220130. doi: 10.1098/rspb.2022.0130.
6
Hyphomicrobium album sp. nov., isolated from mountain soil and emended description of genus Hyphomicrobium.微白黄单胞菌新种,分离自山地土壤及微白黄单胞菌属描述的修正。
Arch Microbiol. 2021 Dec;203(10):5931-5936. doi: 10.1007/s00203-021-02473-6. Epub 2021 Oct 28.
7
sp. nov. and sp. nov., Two Acidophilic Bacteria Isolated from Decaying Wood, Hydrolyzing Cellulose and Producing Poly-3-hydroxybutyrate.新种及新种,从腐朽木材中分离出的两种嗜酸细菌,可水解纤维素并产生聚-3-羟基丁酸酯。
Microorganisms. 2021 Sep 28;9(10):2053. doi: 10.3390/microorganisms9102053.
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Spatiotemporal variability and origin of CO and CH tree stem fluxes in an upland forest.山区森林树干 CO 和 CH 通量的时空变异性及其来源。
Glob Chang Biol. 2021 Oct;27(19):4879-4893. doi: 10.1111/gcb.15783. Epub 2021 Jul 16.
9
Metagenome Assembled Genome of a Novel Verrucomicrobial Methanotroph From Pantelleria Island.来自潘泰莱里亚岛的一种新型疣微菌甲烷氧化菌的宏基因组组装基因组。
Front Microbiol. 2021 May 19;12:666929. doi: 10.3389/fmicb.2021.666929. eCollection 2021.
10
Methanotrophs: Discoveries, Environmental Relevance, and a Perspective on Current and Future Applications.甲烷营养菌:发现、环境相关性以及对当前和未来应用的展望
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