Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), Qingdao, Shandong 266061, PR China.
School of Marine Sciences, Ningbo University, Ningbo, Zhejiang 315832, PR China.
Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004619.
A Gram-stain-negative, motile, rod-shaped, non-endospore-forming, aerobic and halophilic bacterium, designated strain YCWA18, was isolated from the sediment of Jimo-Daqiao saltern in China. This strain was able to grow at NaCl concentrations in the range 0.5-20 % (w/v) with optimum growth at 6 % (w/v) NaCl. Growth occurred at temperatures of 4-40 °C (optimum 28 °C) and pH 4.0-9.0 (optimum 7.0). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YCWA18 belonged to the genus and shared the highest sequence similarity of 98.7 % with DSM 23229. Moreover, the phylogenetic analysis based on the 23S rRNA gene sequence also confirmed the phylogenetic position of this novel strain. The predominant fatty acids were C, C cyclo and C 3-OH. The major isoprenoid quinone was Q-9 (94.2 %) and the polar lipids were diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), an unidentified aminolipid (AL), an unidentified phospholipids (PL) and two unidentified lipids (L). The complete genome of strain YCWA18 consisted of a single, circular chromosome of 3 624 619 bp, with an average G+C content of 59.1 mol%. A genome-based phylogenetic tree constructed using an up-to-date bacterial core gene set (UBCG) showed that strain YCWA18 formed a clade with DSM 23229. However, the level of the ANI and dDDH values between strain YCWA18 and DSM 23229 were 82.3 and 24.6 %, respectively, which were low enough to distinguish strain YCWA18 from DSM 23229. Overall, based on the phenotypic, chemotaxonomic, phylogenetic and genomic analyses, strain YCWA18 represents a novel species of genus . The name sp. nov. is proposed, with the type strain YCWA18 (=CGMCC 1.9149=NCCB 100306).
一株革兰氏阴性、运动性、杆状、非芽孢形成、需氧和嗜盐的细菌,被命名为 YCWA18 菌株,从中国吉莫-大桥盐田的沉积物中分离得到。该菌株能够在 0.5-20%(w/v)的 NaCl 浓度范围内生长,最适生长在 6%(w/v)的 NaCl 中。生长温度为 4-40°C(最适 28°C),pH 值为 4.0-9.0(最适 7.0)。基于 16S rRNA 基因序列的系统发育分析表明,菌株 YCWA18 属于 属,与 DSM 23229 的序列相似性最高,为 98.7%。此外,基于 23S rRNA 基因序列的系统发育分析也证实了该新菌株的系统发育位置。主要脂肪酸为 C、C 环和 C 3-OH。主要的异戊烯醌为 Q-9(94.2%),极性脂为双磷脂酰甘油(DPG)、磷脂酰甘油(PG)、磷脂酰乙醇胺(PE)、一种未鉴定的胺脂(AL)、一种未鉴定的磷脂(PL)和两种未鉴定的脂类(L)。YCWA18 菌株的全基因组由一个单一的、圆形的 3624619bp 的染色体组成,平均 G+C 含量为 59.1mol%。基于最新的细菌核心基因集(UBCG)构建的基因组系统发育树表明,YCWA18 菌株与 DSM 23229 形成一个分支。然而,YCWA18 菌株与 DSM 23229 之间的 ANI 和 dDDH 值分别为 82.3%和 24.6%,足以将 YCWA18 菌株与 DSM 23229 区分开来。总的来说,基于表型、化学分类、系统发育和基因组分析,YCWA18 菌株代表了 属的一个新种。建议使用新名称 sp. nov.,其模式菌株为 YCWA18(=CGMCC 1.9149=NCCB 100306)。