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豆科(Fabaceae)植物的首个完整叶绿体基因组序列。

The first complete chloroplast genome sequence of (Fabaceae).

作者信息

Xin Cheng, Yang Qian

机构信息

Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 7;5(1):410-411. doi: 10.1080/23802359.2019.1705196.

DOI:10.1080/23802359.2019.1705196
PMID:33366580
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748550/
Abstract

belongs to the Fabaceae. It is a perennial herb, with high economic value. The cpDNA of was 124,682 bp long with IR loss. It contains 109 genes, including 76 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. The overall GC content is 35.1%. The phylogenetic tree indicates that species formed a monophyletic lineage with high bootstrap value. This study has provided new genome information for the phylogenetic analysis of Fabaceae.

摘要

属于豆科。它是一种多年生草本植物,具有很高的经济价值。[植物名称]的叶绿体DNA(cpDNA)长度为124,682碱基对,存在反向重复序列(IR)缺失。它包含109个基因,包括76个蛋白质编码基因、29个tRNA基因和4个rRNA基因。总体GC含量为35.1%。系统发育树表明,[植物名称]物种形成了一个具有高自展值的单系类群。本研究为豆科的系统发育分析提供了新的基因组信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1165/7748550/311dedb31fcc/TMDN_A_1705196_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1165/7748550/311dedb31fcc/TMDN_A_1705196_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1165/7748550/311dedb31fcc/TMDN_A_1705196_F0001_B.jpg

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本文引用的文献

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2
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
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NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.
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PLoS One. 2012;7(2):e30619. doi: 10.1371/journal.pone.0030619. Epub 2012 Feb 1.
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