• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

浙江省药用植物叶绿体全基因组的分子结构与系统发育分析

Molecular structure and phylogenetic analysis of complete chloroplast genomes of medicinal species from Zhejiang Province.

作者信息

Gao Chenshu, Wang Qirui, Ying Zhiqi, Ge Yuqing, Cheng Rubin

机构信息

College of Pharmaceutical Science, Zhejiang Chinese Medical University, Hangzhou, China.

The First Affiliated Hospital, Zhejiang Chinese Medical University, Hangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Feb 7;5(1):1077-1078. doi: 10.1080/23802359.2020.1721372.

DOI:10.1080/23802359.2020.1721372
PMID:33366882
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748428/
Abstract

is a geo-authentic and superior medicinal plant in Zhejiang province. Here, we report the complete chloroplast genome sequence of . The total genome size of is 153,405 bp in length, including a small single-copy (SSC) region of 16,969 bp, a large single-copy (LSC) region of 84,340 bp separated by a pair of inverted repeats (IRs) of 26,048 bp. The overall annotated gene number is 109, containing 76 protein-coding genes, 29 tRNAs and 4 rRNAs. The entire GC content of is 38.43%, with the highest GC content of 42.99% in IR region. A total of 52 simple sequence repeats are identified in the cp genome of . Phylogenetic analysis indicated a sister relationship between and , and supported a unique evolutionary status of Family Paeoniaceae. This work provides a valuable genetic resource to develop robust markers and investigate the population genetics diversities for this famous medicinal species.

摘要

是浙江省地道且优良的药用植物。在此,我们报道了……的完整叶绿体基因组序列。……的基因组全长153,405 bp,包括一个16,969 bp的小单拷贝(SSC)区域、一个84,340 bp的大单拷贝(LSC)区域以及一对26,048 bp的反向重复序列(IR)。注释的基因总数为109个,包括76个蛋白质编码基因、29个tRNA和4个rRNA。……的整体GC含量为38.43%,IR区域的GC含量最高,为42.99%。在……的叶绿体基因组中总共鉴定出52个简单序列重复。系统发育分析表明……与……之间存在姐妹关系,并支持芍药科独特的进化地位。这项工作为开发强大的标记以及研究这种著名药用物种的群体遗传多样性提供了宝贵的遗传资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b320/7748428/84ca7f5d91d4/TMDN_A_1721372_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b320/7748428/84ca7f5d91d4/TMDN_A_1721372_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b320/7748428/84ca7f5d91d4/TMDN_A_1721372_F0001_B.jpg

相似文献

1
Molecular structure and phylogenetic analysis of complete chloroplast genomes of medicinal species from Zhejiang Province.浙江省药用植物叶绿体全基因组的分子结构与系统发育分析
Mitochondrial DNA B Resour. 2020 Feb 7;5(1):1077-1078. doi: 10.1080/23802359.2020.1721372.
2
The complete chloroplast genome of Pall. (Paeoniaceae).芍药属(芍药科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2019 Jul 22;4(2):2715-2716. doi: 10.1080/23802359.2019.1644548.
3
The Complete Mitochondrial Genome of Pall. (Saxifragales: Paeoniaceae): Evidence of Gene Transfer from Chloroplast to Mitochondrial Genome.Pall.(虎耳草目:芍药科)的完整线粒体基因组:叶绿体到线粒体基因组基因转移的证据。
Genes (Basel). 2024 Feb 14;15(2):239. doi: 10.3390/genes15020239.
4
The complete chloroplast genome sequence of the medicinal plant  Franchet. (Paeoniaceae).药用植物川赤芍(芍药科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2019 Oct 15;4(2):3553-3555. doi: 10.1080/23802359.2019.1677528.
5
Complete chloroplast genome of Stephania tetrandra (Menispermaceae) from Zhejiang Province: insights into molecular structures, comparative genome analysis, mutational hotspots and phylogenetic relationships.浙江省头花千金藤(防己科)完整叶绿体基因组:分子结构、比较基因组分析、突变热点和系统发育关系的见解。
BMC Genomics. 2021 Dec 6;22(1):880. doi: 10.1186/s12864-021-08193-x.
6
Characterization of the complete chloroplast genome of DC. (Oxalidaceae), a medicinal plant from Zhejiang Province.浙江省药用植物酢浆草(酢浆草科)叶绿体全基因组特征分析
Mitochondrial DNA B Resour. 2021 Mar 22;6(3):1138-1140. doi: 10.1080/23802359.2021.1882905.
7
The complete chloroplast genome of the medicinal plant (Polygonaceae) and its phylogenetic implications within the subfamily Polygonoideae.药用植物(蓼科)的完整叶绿体基因组及其在蓼亚科内的系统发育意义。
Mitochondrial DNA B Resour. 2021 Apr 26;6(4):1563-1565. doi: 10.1080/23802359.2021.1917313.
8
The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms.美丽十大功劳(小檗科)完整叶绿体基因组序列揭示了反向重复区的显著扩张及其与其他开花植物的系统发育关系。
Gene. 2013 Oct 10;528(2):120-31. doi: 10.1016/j.gene.2013.07.037. Epub 2013 Jul 27.
9
The complete chloroplast genome of cv. Hwang-Moran (Paeoniaceae).栽培品种黄牡丹(芍药科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2021 Jan 27;6(1):280-281. doi: 10.1080/23802359.2020.1860721.
10
Comparative and phylogenetic analyses of the chloroplast genomes of species of Paeoniaceae.牡丹科植物叶绿体基因组的比较和系统发育分析。
Sci Rep. 2021 Jul 19;11(1):14643. doi: 10.1038/s41598-021-94137-0.

引用本文的文献

1
The Complete Mitochondrial Genome of Pall. (Saxifragales: Paeoniaceae): Evidence of Gene Transfer from Chloroplast to Mitochondrial Genome.Pall.(虎耳草目:芍药科)的完整线粒体基因组:叶绿体到线粒体基因组基因转移的证据。
Genes (Basel). 2024 Feb 14;15(2):239. doi: 10.3390/genes15020239.
2
The plastome reveals new insights into the evolutionary and domestication history of peonies in East Asia.质体基因组揭示了东亚牡丹进化和驯化历史的新见解。
BMC Plant Biol. 2023 May 8;23(1):243. doi: 10.1186/s12870-023-04246-3.
3
Development of Mini-Barcode Based on Chloroplast Genome and Its Application in Metabarcoding Molecular Identification of Chinese Medicinal Material Radix (Chishao).

本文引用的文献

1
The complete chloroplast genome sequence and phylogenetic analysis of the medicinal plant .药用植物的叶绿体全基因组序列及系统发育分析
Mitochondrial DNA B Resour. 2019 Nov 8;4(2):3878-3879. doi: 10.1080/23802359.2019.1688115.
2
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
3
metaSPAdes: a new versatile metagenomic assembler.metaSPAdes:一种新型通用宏基因组序列拼接软件
基于叶绿体基因组的微型条形码开发及其在中药赤芍代谢条形码分子鉴定中的应用
Front Plant Sci. 2022 Mar 31;13:819822. doi: 10.3389/fpls.2022.819822. eCollection 2022.
4
Complete chloroplast genome of Stephania tetrandra (Menispermaceae) from Zhejiang Province: insights into molecular structures, comparative genome analysis, mutational hotspots and phylogenetic relationships.浙江省头花千金藤(防己科)完整叶绿体基因组:分子结构、比较基因组分析、突变热点和系统发育关系的见解。
BMC Genomics. 2021 Dec 6;22(1):880. doi: 10.1186/s12864-021-08193-x.
5
Characterization of the complete chloroplast genome of the medicinal plant (Rutaceae) in Zhejiang Province and its phylogenetic analysis within family Rutaceae.浙江省药用植物(芸香科)叶绿体全基因组特征及其在芸香科内的系统发育分析
Mitochondrial DNA B Resour. 2021 May 24;6(6):1734-1736. doi: 10.1080/23802359.2021.1931511.
6
The complete chloroplast genome of the medicinal plant (Polygonaceae) and its phylogenetic implications within the subfamily Polygonoideae.药用植物(蓼科)的完整叶绿体基因组及其在蓼亚科内的系统发育意义。
Mitochondrial DNA B Resour. 2021 Apr 26;6(4):1563-1565. doi: 10.1080/23802359.2021.1917313.
7
Characterization of the complete chloroplast genome of DC. (Oxalidaceae), a medicinal plant from Zhejiang Province.浙江省药用植物酢浆草(酢浆草科)叶绿体全基因组特征分析
Mitochondrial DNA B Resour. 2021 Mar 22;6(3):1138-1140. doi: 10.1080/23802359.2021.1882905.
8
Complete chloroplast genome sequence of the medicinal plant ramie ( L. gaud) and its phylogenetic relationship to other Urticaceae species.药用植物苎麻(Boehmeria nivea (L.) Gaud.)的叶绿体全基因组序列及其与荨麻科其他物种的系统发育关系。
Mitochondrial DNA B Resour. 2021 Mar 22;6(3):1136-1137. doi: 10.1080/23802359.2021.1878959.
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
4
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
5
Anti-inflammatory and immunomodulatory effects of paeonia lactiflora pall., a traditional chinese herbal medicine.中药芍药的抗炎和免疫调节作用
Front Pharmacol. 2011 Feb 25;2:10. doi: 10.3389/fphar.2011.00010. eCollection 2011.