Suppr超能文献

浙江省药用植物酢浆草(酢浆草科)叶绿体全基因组特征分析

Characterization of the complete chloroplast genome of DC. (Oxalidaceae), a medicinal plant from Zhejiang Province.

作者信息

Zhou Manjia, Yan Meixiu, Ying Zhiqi, He Xiangyu, Ge Yuqing, Cheng Rubin

机构信息

College of Pharmaceutical Science, Zhejiang Chinese Medical University, Hangzhou, China.

The First Affiliated Hospital of Zhejiang, Chinese Medical University, Hangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2021 Mar 22;6(3):1138-1140. doi: 10.1080/23802359.2021.1882905.

Abstract

DC. is an important medicinal and edible perennial herb belonging to the wood-sorrel family Oxalidaceae. In this study, we report the complete chloroplast (cp) genome sequence of . The assembled chloroplast genome was 151,351 bp in length, containing two inverted repeated (IR) regions of 24,587 bp each, a large single copy (LSC) region of 85,476 bp, and a small single copy (SSC) region of 16,701 bp. The genome encodes 128 genes, consisting of 82 protein-coding genes, 37 tRNA genes, eight rRNA genes, and one pseudogene (). The 82 protein-coding genes encode 25,751 amino acids in total, most of which use the initiation codon ATG, except and genes start with GTG. The lengths of the tRNA genes range from 71 bp to 93 bp, with the highest GC content of 62.16% in tRNA-Arg (ACG). The overall GC content of is 36.47%, with the highest GC content of 42.64% in IR region. In addition, a total of 74 simple sequence repeats were identified in the cp genome of . Phylogenetic analysis indicated a sister relationship between and , suggesting a close genetic relationship between the two species. This work provides basic genetic resources for investigating the evolutionary status and population genetics diversities for this medicinal species.

摘要

DC.是一种重要的药食两用多年生草本植物,属于酢浆草科。在本研究中,我们报道了DC.的完整叶绿体(cp)基因组序列。组装后的叶绿体基因组长度为151,351 bp,包含两个长度均为24,587 bp的反向重复(IR)区域、一个85,476 bp的大单拷贝(LSC)区域和一个16,701 bp的小单拷贝(SSC)区域。该基因组编码128个基因,包括82个蛋白质编码基因、37个tRNA基因、8个rRNA基因和一个假基因()。82个蛋白质编码基因共编码25,751个氨基酸,其中大多数使用起始密码子ATG,除了和基因以GTG起始。tRNA基因的长度范围为71 bp至93 bp,tRNA-Arg(ACG)的GC含量最高,为62.16%。DC.的总体GC含量为36.47%,IR区域的GC含量最高,为42.64%。此外,在DC.的cp基因组中总共鉴定出74个简单序列重复。系统发育分析表明DC.与之间存在姐妹关系,表明这两个物种之间存在密切的遗传关系。这项工作为研究这种药用植物的进化地位和群体遗传学多样性提供了基础遗传资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e46f/8006946/3a83829068a8/TMDN_A_1882905_F0001_B.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验