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.的完整叶绿体基因组

The complete chloroplast genome of .

作者信息

Zeng Tuo, Li Jiawen, Wang Caiyun, He Jiefang

机构信息

School of Life Sciences, Guizhou Normal University, Guiyang, China.

Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture & ForestrySciences, Huazhong Agricultural University, Wuhan, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 1;5(3):2233-2234. doi: 10.1080/23802359.2020.1768915. eCollection 2020.

DOI:10.1080/23802359.2020.1768915
PMID:33366986
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7510654/
Abstract

, a perennial plant of the genus, cultivated as a natural pesticide or ornamental plant widely distributed in many countries. In this research, the complete chloroplast genome sequence of was determined to comprise a 150,143 bp double-stranded circular DNA, including a pair of 24,416 bp inverted repeat regions (IRs), small single copy (SSC) region of 18,389 bp and large single copy (LCS) region of 82,922 bp. An overall GC content was 37.49%, and the corresponding values in IRs, SSC, and LSC regions are 43.16%, 30.88%, and 35.61%, respectively. A total of 129 genes include 84 protein-coding genes, 37 tRNA, and eight rRNA. Four rRNA genes and seven tRNA genes were duplicated in IRs. A phylogenetic tree reconstructed by 38 Composite family chloroplast genomes sequence reveals that is mostly related to .

摘要

,一种 属的多年生植物,作为天然杀虫剂或观赏植物被广泛种植于许多国家。在本研究中, 的完整叶绿体基因组序列被确定为包含一个150,143 bp的双链环状DNA,包括一对24,416 bp的反向重复区域(IRs)、一个18,389 bp的小单拷贝(SSC)区域和一个82,922 bp的大单拷贝(LCS)区域。总体GC含量为37.49%,IRs、SSC和LSC区域的相应值分别为43.16%、30.88%和35.61%。总共129个基因包括84个蛋白质编码基因、37个tRNA和8个rRNA。四个rRNA基因和七个tRNA基因在IRs中重复。由38个菊科叶绿体基因组序列重建的系统发育树表明, 与 关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0499/7510654/17d61ca8eee5/TMDN_A_1768915_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0499/7510654/17d61ca8eee5/TMDN_A_1768915_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0499/7510654/17d61ca8eee5/TMDN_A_1768915_F0001_B.jpg

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本文引用的文献

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Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. doi: 10.1093/molbev/msy096.
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HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching.HomBlocks:基于局部共线性块搜索的细胞器系统发育基因组学多重比对构建流水线。
Genomics. 2018 Jan;110(1):18-22. doi: 10.1016/j.ygeno.2017.08.001. Epub 2017 Aug 3.
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GeSeq - versatile and accurate annotation of organelle genomes.
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Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
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