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中国特有的易危物种[物种名称]完整叶绿体基因组的特征分析 。(注:原文中缺少具体物种名称)

Characterization of the complete chloroplast genome of , a vulnerable species endemic to China.

作者信息

Liu Jinfeng, Liu Siyan, Wang Rui, Guan Shuyan, Qu Jing

机构信息

College of Life Sciences, Jilin Agricultural University, Changchun, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 2;5(3):2269-2270. doi: 10.1080/23802359.2019.1710602. eCollection 2020.

DOI:10.1080/23802359.2019.1710602
PMID:33367003
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7510628/
Abstract

is only sporadically distributed in the western part of Sichuan, the area of the willows is narrow. There are not many plants, and they easily fall into the endangered state. It is currently on the International Union for Conservation of Nature (IUCN) red list of threatened species. In this study, we first assembled the complete chloroplast (cp) genome of by Illumina paired-end reads data. The whole genome was 154,977 bp, consisting of a pair of inverted repeats of 27,457 bp, large single-copy region, and a small single-copy region (71,119 and 16,205 bp in length, respectively). The cp genome contained 116 genes, including 80 protein-coding genes and 36 tRNA genes. The overall GC content of the whole genome was 36.7%. A neighbour-joining phylogenetic analysis demonstrated a close relationship between and .

摘要

仅零星分布于四川西部,柳树分布区域狭窄。植株数量不多,极易陷入濒危状态。它目前在国际自然保护联盟(IUCN)濒危物种红色名录上。在本研究中,我们首先通过Illumina双端测序数据组装了[物种名称未给出]的完整叶绿体(cp)基因组。全基因组为154,977 bp,由一对27,457 bp的反向重复序列、一个大单拷贝区域和一个小单拷贝区域(长度分别为71,119和16,205 bp)组成。cp基因组包含116个基因,包括80个蛋白质编码基因和36个tRNA基因。全基因组的总体GC含量为36.7%。邻接法系统发育分析表明[物种名称未给出]与[另一物种名称未给出]之间关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cca/7510628/d4fa95dcb556/TMDN_A_1710602_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cca/7510628/d4fa95dcb556/TMDN_A_1710602_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cca/7510628/d4fa95dcb556/TMDN_A_1710602_F0001_C.jpg

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本文引用的文献

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The Complete Chloroplast Genome of Wild Rice () and Its Comparison to Related Species.野生稻()的完整叶绿体基因组及其与相关物种的比较。
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Contrasting responses in the growth and energy utilization properties of sympatric Populus and Salix to different altitudes: implications for sexual dimorphism in Salicaceae.同域分布的杨树和柳树在不同海拔下生长及能量利用特性的对比响应:对杨柳科两性异形的启示
Physiol Plant. 2017 Jan;159(1):30-41. doi: 10.1111/ppl.12479. Epub 2016 Jul 13.
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OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.
细胞器基因组绘图软件--一套用于生成质体和线粒体基因组物理图谱以及可视化表达数据集的工具。
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
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