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基于多重PCR检测法的生物威胁细菌检测诊断试剂盒的开发及实验室间验证

Development and Inter-Laboratory Validation of Diagnostics Panel for Detection of Biothreat Bacteria Based on MOL-PCR Assay.

作者信息

Jelinkova Pavlina, Hrdy Jakub, Markova Jirina, Dresler Jiri, Pajer Petr, Pavlis Oto, Branich Pavel, Borilova Gabriela, Reichelova Marketa, Babak Vladimir, Reslova Nikol, Kralik Petr

机构信息

Department of Microbiology and Antimicrobial Resistance, Veterinary Research Institute, Hudcova 296/70, 621 00 Brno, Czech Republic.

Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic.

出版信息

Microorganisms. 2020 Dec 24;9(1):38. doi: 10.3390/microorganisms9010038.

DOI:10.3390/microorganisms9010038
PMID:33374468
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7823616/
Abstract

Early detection of biohazardous bacteria that can be misused as biological weapons is one of the most important measures to prevent the spread and outbreak of biological warfare. For this reason, many instrument platforms need to be introduced into operation in the field of biological warfare detection. Therefore the purpose of this study is to establish a new detection panel for biothreat bacteria (, , and spp.) and confirm it by collaborative validation by using a multiplex oligonucleotide ligation followed by polymerase chain reaction and hybridization to microspheres by MagPix detection platform (MOL-PCR). Appropriate specific sequences in bacterial DNA were selected and tested to assemble the detection panel, and MOLigo probes (short specific oligonucleotides) were designed to show no cross-reactivity when tested between bacteria and to decrease the background signal measurement on the MagPix platform. During testing, sensitivity was assessed for all target bacteria using serially diluted DNA and was determined to be at least 0.5 ng/µL. For use as a diagnostic kit and easier handling, the storage stability of ligation premixes (MOLigo probe mixes) was tested. This highly multiplex method can be used for rapid screening to prevent outbreaks arising from the use of bacterial strains for bioterrorism, because time of analysis take under 4 h.

摘要

早期检测可能被滥用作生物武器的生物危害细菌是预防生物战传播和爆发的最重要措施之一。因此,许多仪器平台需要引入到生物战检测领域投入使用。因此,本研究的目的是建立一种针对生物威胁细菌(、、和属)的新型检测面板,并通过使用多重寡核苷酸连接,随后进行聚合酶链反应以及通过MagPix检测平台(MOL-PCR)与微球杂交的协作验证来对其进行确认。选择并测试细菌DNA中的适当特异性序列以组装检测面板,并设计MOLigo探针(短特异性寡核苷酸),使其在细菌之间测试时无交叉反应,并降低MagPix平台上的背景信号测量值。在测试过程中,使用系列稀释的DNA对所有目标细菌的灵敏度进行评估,确定其灵敏度至少为0.5 ng/µL。为用作诊断试剂盒并便于操作,对连接预混物(MOLigo探针混合物)的储存稳定性进行了测试。这种高度多重的方法可用于快速筛查,以防止因使用细菌菌株进行生物恐怖主义而引发的疫情爆发,因为分析时间在4小时以内。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/2be6a88b12e8/microorganisms-09-00038-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/db9c4579ed31/microorganisms-09-00038-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/8801d59c172f/microorganisms-09-00038-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/23008b0fbb0d/microorganisms-09-00038-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/59f8c422fa79/microorganisms-09-00038-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/2be6a88b12e8/microorganisms-09-00038-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/db9c4579ed31/microorganisms-09-00038-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/8801d59c172f/microorganisms-09-00038-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/23008b0fbb0d/microorganisms-09-00038-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/59f8c422fa79/microorganisms-09-00038-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8d/7823616/2be6a88b12e8/microorganisms-09-00038-g005.jpg

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