Lee Soon Dong, Kim Sung-Min, Yang Hong Lim, Byeon Yeong-Sik, Kim In Seop
Institute of Jeju Microbial Resources, BioPS Co., Ltd., Jeju, 63243, Republic of Korea.
Department of Food Bioengineering, Jeju National University, Jeju, 63243, Republic of Korea.
Arch Microbiol. 2021 May;203(4):1335-1343. doi: 10.1007/s00203-020-02083-8. Epub 2021 Jan 2.
A Gram stain-negative bacterial strain, designated SY4-7, was isolated from rhizosphere mudflat of a halophyte (Zoysia sinica) collected around Seonyu Island, Republic of Korea. Cells of the organism were strictly aerobic, non-sporulating, non-motile rods and grew at 20-42 °C, pH 6-8 and 1-6% (w/v) NaCl. The 16S rRNA gene-based phylogenetic analyses revealed that strain SY4-7 formed an independent cluster separated from the recognized genera of the family Stappiaceae, which was also supported by phylogenomic analysis-based 92-core gene sequences. The type stains of the phylogenetically closest relatives were Stappia indica (95.6% sequence similarity), Stappia stellulata (95.1%) and Roseibium hamelinense (95.1%). The isoprenoid quinone was Q-10. The polar lipids consisted of phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, three unidentified aminophospholipids, an unidentified phosphoglycolipid, an unidentified aminolipid, two unidentified phospholipids and an unidentified lipid. The major cellular fatty acids are Cω7c and C cyclo ω8c. The G + C content of the genomic DNA is 60.7%. Discrimination of the organism from all the recognized genera of the family Stappiaceae was apparent by the chemotaxonomic and phylogenetic features. Based on the results presented here, strain SY4-7 (= KCTC 72226 = NBRC 113902) represents a novel species of a new genus in the family Stappiaceae, for which the name Hongsoonwoonella zoysiae sp. nov. is proposed.
从韩国仙游岛附近采集的盐生植物(中华结缕草)根际泥滩中分离出一株革兰氏阴性细菌菌株,命名为SY4-7。该菌株细胞严格需氧,不产芽孢,无运动性,呈杆状,在20-42℃、pH值6-8和1-6%(w/v)NaCl条件下生长。基于16S rRNA基因的系统发育分析表明,菌株SY4-7形成了一个独立的簇,与斯塔皮科家族中已确认的属分开,基于92个核心基因序列的系统基因组分析也支持这一点。系统发育关系最密切的亲缘菌株的模式菌株是印度斯塔皮菌(序列相似性95.6%)、星状斯塔皮菌(95.1%)和哈梅林玫瑰菌(95.1%)。类异戊二烯醌为Q-10。极性脂质由磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油、三种未鉴定的氨基磷脂、一种未鉴定的磷酸糖脂、一种未鉴定的氨基脂、两种未鉴定的磷脂和一种未鉴定的脂质组成。主要细胞脂肪酸为Cω7c和C环ω8c。基因组DNA的G+C含量为60.7%。通过化学分类和系统发育特征,该菌株与斯塔皮科家族所有已确认的属明显不同。基于此处给出的结果,菌株SY4-7(=KCTC 72226=NBRC 113902)代表斯塔皮科家族一个新属的一个新物种,为此提出新名称中华结缕草洪顺云菌属新种。