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计算模型支持登革热病毒包膜抗体可与严重急性呼吸综合征冠状病毒2(SARS-CoV-2)受体结合位点结合:预先接触登革热病毒对新型冠状病毒肺炎(COVID-19)的严重程度有保护作用吗?

Computational modelling supports that dengue virus envelope antibodies can bind to SARS-CoV-2 receptor binding sites: Is pre-exposure to dengue virus protective against COVID-19 severity?

作者信息

Nath Himadri, Mallick Abinash, Roy Subrata, Sukla Soumi, Biswas Subhajit

机构信息

Infectious Diseases & Immunology Division, CSIR-Indian Institute of Chemical Biology (CSIR-IICB), 4, Raja S.C. Mullick Rd, Jadavpur, Kolkata 700032, West Bengal, India.

National Institute of Pharmaceutical Education and Research, 168, Maniktala Main Road, Kolkata 700054, West Bengal, India.

出版信息

Comput Struct Biotechnol J. 2021;19:459-466. doi: 10.1016/j.csbj.2020.12.037. Epub 2020 Dec 29.

Abstract

The world is going through the scourge of the COVID-19 pandemic since January 2020. However, the pandemic appears to be less severe in highly dengue endemic countries. In this connection, several studies reported that sero-diagnostic tests for dengue virus (DV) yielded considerable false-positive results for SARS-CoV-2 and in dengue endemic regions, thereby indicating towards potential cross-reactivity between these two viruses. We anticipated that SARS-CoV-2 and DV might share antigenic similarity and performed computational docking studies to test this hypothesis. Our results predicted with high confidence that human DV antibodies can indeed, bind to RBD of SARS-CoV-2 Spike protein. Some of these interactions can also potentially intercept human ACE2 receptor binding to RBM. Dengue serum samples predating the COVID-19, had been found to cross-react with SARS-CoV-2 Spike and this provides direct experimental validation of our predictions. Our analysis also showed that m396 and 80R antibodies (against SARS-CoV-1) did not dock with RBM of SARS-CoV-2, a fact already proven experimentally. This confirmed reliability and robustness of our approach. So, it is highly probable that immunological memory/antibodies to DV in endemic countries may reduce the severity and spread of COVID-19. It is not known whether SARS-CoV-2 antibodies will hinder DV infections by binding to DV particles and reduce dengue incidences in the future or, augment DV infection and severity by deploying antibody-dependent enhancement.

摘要

自2020年1月以来,世界一直在遭受新冠疫情的肆虐。然而,在登革热高度流行的国家,疫情似乎没那么严重。在这方面,多项研究报告称,登革热病毒(DV)的血清诊断测试对新冠病毒(SARS-CoV-2)产生了相当多的假阳性结果,在登革热流行地区也是如此,这表明这两种病毒之间可能存在交叉反应。我们预计SARS-CoV-2和DV可能具有抗原相似性,并进行了计算机对接研究来验证这一假设。我们的结果高度可靠地预测,人类DV抗体确实可以与SARS-CoV-2刺突蛋白的受体结合域(RBD)结合。其中一些相互作用还可能潜在地阻断人类血管紧张素转换酶2(ACE2)受体与受体结合基序(RBM)的结合。在新冠疫情之前采集的登革热血清样本已被发现与SARS-CoV-2刺突蛋白发生交叉反应,这为我们的预测提供了直接的实验验证。我们的分析还表明,m396和80R抗体(针对SARS-CoV-1)未与SARS-CoV-2的RBM对接,这一事实已通过实验得到证实。这证实了我们方法的可靠性和稳健性。因此,在流行国家,针对DV的免疫记忆/抗体很可能会降低新冠疫情的严重程度和传播。目前尚不清楚SARS-CoV-2抗体未来是否会通过与DV颗粒结合来阻碍DV感染并降低登革热发病率,或者通过抗体依赖增强作用加剧DV感染及其严重程度。

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