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肠球菌噬菌体 Nonaheksakonda 感染粪肠球菌临床分离株代表了 Siphoviridae 科的一个新谱系。

Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae.

机构信息

Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg, Denmark.

Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000, Roskilde, Denmark.

出版信息

Arch Virol. 2021 Feb;166(2):593-599. doi: 10.1007/s00705-020-04905-y. Epub 2021 Jan 3.

Abstract

Enterococcus phage Nonaheksakonda was isolated from wastewater, using a vancomycin-resistant strain of the opportunistic pathogen Enterococcus faecalis (VRE) as a host. Nonaheksakonda is a lytic phage infecting E. faecalis V583 and clinical isolates with at least four different multi-locus sequence types (MLSTs). The genome is a 41.9-kb double-stranded DNA molecule (34.6% GC) with 74 coding sequences. Comparative analysis revealed only one close relative, Enterococcus phage heks. All other phages had low protein similarity and shared less than 54% nucleotide sequence identity with phage Nonaheksakonda. The most similar phages were all classified and unclassified efquatroviruses. We propose that the phages Nonaheksakonda and heks represent a novel genus within the family Siphoviridae, order Caudovirales, for which we propose the name "Nonaheksakondavirus".

摘要

肠球菌噬菌体 Nonaheksakonda 是从废水分离出来的,使用耐万古霉素的机会性病原体粪肠球菌(VRE)作为宿主。Nonaheksakonda 是一种裂解噬菌体,感染 E. faecalis V583 和具有至少四种不同多位点序列类型(MLST)的临床分离株。基因组是一个 41.9-kb 的双链 DNA 分子(34.6%GC),包含 74 个编码序列。比较分析仅显示出一个密切相关的噬菌体,即肠球菌噬菌体 heks。所有其他噬菌体与噬菌体 Nonaheksakonda 的蛋白相似度较低,核苷酸序列同一性小于 54%。最相似的噬菌体均属于 efquatroviruses 分类和未分类。我们提出噬菌体 Nonaheksakonda 和 heks 代表尾噬菌体科,柯萨奇病毒目,Caudovirales 目中的一个新属,我们建议将其命名为“Nonaheksakondavirus”。

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