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一个具有显著生物合成潜力的进化枝。

A Clade with Remarkable Biosynthetic Potential.

机构信息

School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Kensington, NSW, Australia.

School of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW, Australia.

出版信息

Appl Environ Microbiol. 2021 Feb 26;87(6). doi: 10.1128/AEM.02604-20.

Abstract

species produce a diverse range of biologically active compounds, including those biosynthesized by nonribosomal peptide synthetases (NRPSs) and polyketide synthases (PKSs). Here, we report the biochemical and genomic analysis of sp. strain HM-SA03, isolated from the blue-ringed octopus, sp. Genome mining for secondary metabolite pathways revealed seven putative NRPS/PKS biosynthesis gene clusters, including those for the biosynthesis of alterochromides, pseudoalterobactins, alteramides, and four novel compounds. Among these was a novel siderophore biosynthesis gene cluster with unprecedented architecture (NRPS-PKS-NRPS-PKS-NRPS-PKS-NRPS). Alterochromide production in HM-SA03 was also confirmed by liquid chromatography-mass spectrometry. An investigation of the biosynthetic potential of 42 publicly available genomes indicated that some of these gene clusters are distributed throughout the genus. Through the phylogenetic analysis, a particular subset of strains formed a clade with extraordinary biosynthetic potential, with an average density of 10 biosynthesis gene clusters per genome. In contrast, the majority of strains outside this clade contained an average of three clusters encoding complex biosynthesis. These results highlight the underexplored potential of as a source of new natural products. This study demonstrates that the strain HM-SA03, isolated from the venomous blue-ringed octopus, sp., is a biosynthetically talented organism, capable of producing alterochromides and potentially six other specialized metabolites. We identified a pseudoalterobactin biosynthesis gene cluster and proposed a pathway for the production of the associated siderophore. A novel siderophore biosynthesis gene cluster with unprecedented architecture was also identified in the HM-SA03 genome. Finally, we demonstrated that HM-SA03 belongs to a phylogenetic clade of strains with extraordinary biosynthetic potential. While our results do not support a role of HM-SA03 in sp. venom (tetrodotoxin) production, they emphasize the untapped potential of as a source of novel natural products.

摘要

该物种产生了多种生物活性化合物,包括非核糖体肽合成酶(NRPSs)和聚酮合酶(PKSs)生物合成的化合物。在这里,我们报告了 sp。菌株 HM-SA03 的生化和基因组分析,该菌株从蓝环章鱼, sp。基因组挖掘用于次生代谢途径的分析揭示了七个推定的 NRPS/PKS 生物合成基因簇,包括alterochromides、pseudoalterobactins、alteramides 和四种新型化合物的生物合成。其中包括具有前所未有的结构(NRPS-PKS-NRPS-PKS-NRPS-PKS-NRPS)的新型铁载体生物合成基因簇。通过液相色谱-质谱法也证实了 HM-SA03 中 alterochromide 的产生。对 42 个公开可用的 基因组的生物合成潜力的研究表明,这些基因簇中的一些分布在整个属中。通过系统发育分析,一个特定的菌株亚群形成了一个具有非凡生物合成潜力的分支,每个基因组的平均生物合成基因簇密度为 10 个。相比之下,该分支以外的大多数 菌株平均包含三个编码复杂生物合成的簇。这些结果突出了 作为新天然产物来源的未被充分探索的潜力。本研究表明,从有毒蓝环章鱼, sp。分离的菌株 HM-SA03 是一种具有生物合成能力的生物体,能够产生 alterochromides 和可能的其他六种特殊代谢物。我们鉴定了一个 pseudoalterobactin 生物合成基因簇,并提出了产生相关铁载体的途径。在 HM-SA03 基因组中还鉴定了一个具有前所未有的结构的新型铁载体生物合成基因簇。最后,我们证明 HM-SA03 属于具有非凡生物合成潜力的菌株的系统发育分支。虽然我们的结果不支持 HM-SA03 在 sp。毒液(河豚毒素)的产生,但它们强调了 作为新型天然产物来源的潜力。

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